Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_3778 |
Symbol | |
ID | 6112742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 4200450 |
End bp | 4202009 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641623569 |
Product | transcriptional regulator, TyrR |
Protein accession | YP_001750629 |
Protein GI | 170722941 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.18738 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.000851143 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGTATCA AAGTGCATTG CCAGAACCGC ATCGGCATCC TTCGGGACAT CCTCAACCTG TTGGTGGAGT ACGGAATCAA CGTACTCCGT GGTGAAGTCG GCGGTGACCA TGGCAATGCC ATCTACCTGC ATTGCCCGAA CCTCATCAAC CTGCAGTTCC AGGCTCTACG TCCGAAATTC GAGTCGATTG CCGGGGTCTT CGGGGTCAAG CGTGTCGGCT TGATGCCCAG CGAGCGACGG CACATGGAGC TCAACGCGCT GCTGGGGGCG CTGGATTTCC CGGTGCTGTC GGTCGACATG GGCGGCAGCA TCGTCGCCGC CAACCGCACC GCCGCGCAGT TGCTGGGCGT GAGGGTCGAC GAGGTGCCGG GCATCCCGTT GGCGCGCTAT GTAGAGGACT TTGACCTGCC GGAACTGGTG CGGGCCAACA AATCTCGAAT CAATGGCCTA CGGGTCAAGG TCAAGGGTGA TATTTTCCTG GCCGACATCG CACCTTTGCA GTCCGAGCAT GACGACAGCG AGGCATTGGC TGGCGCGGTG TTGACCTTGC ACCGTGCCGA CCGCATCGGT GAGCGGATTT ACAACGTACG CAAACAGGAG CTGCGCGGCT TCGACAGCAT CTTCCAGAGC TCGCGGGTGA TGGCGGCTGT GGTGCGTGAG GCGCGGCGCA TGGCGCCGCT GGACGCGCCG CTGCTGATCG AAGGTGAGAC AGGTACAGGC AAAGAGCTGT TGGCGCGTGC CTGCCACCTG GCCAGCCCGC GGGGGCAGGC GCCTTTGATG GCCCTCAATT GTGCCGGCCT GCCAGAGTCC ATGGCGGAAA CCGAGCTGTT CGGTTATGGC CCCGGCGCGT TCGAGGGGGC CCGCGCCGAA GGCAAACTGG GCCTTCTGGA GTTGACCGCT GGCGGAACAC TGTTCCTCGA TGGGGTGGGG GAGATGAGCC CGCGTCTGCA GGTGAAGTTG CTTCGCTTTC TGCAGGACGG CTGCTTCCGT CGCGTTGGCA GTGATGAAGA AGTTTACCTG GATGTACGGG TGATCTGCGC AACCCAGGTG GACCTTTCCG AATTGTGCGC TCGGGGCGAA TTCCGCCAGG ACCTGTACCA TCGCCTCAAT GTGTTGTCGT TGCACATACC GCCGTTGCGC GAGTGCATGG ACGGCCTGGA AGGGTTGGTG CAGCACTTTC TCGATCAGGC CAGCCGGCAG ATTGGTTGTG CCCTGCCGCG CCTGGCGCCT GCGGCGATGG ACAAACTGGC GCACTACCAT TGGCCGGGCA ATGTCCGGCA ACTGGAAAAC GTATTGTTCC AGGCGGTATC GCTGTGCGAA GGCGGAATAG TGAAAGGCGA ACATATCCGC TTGCCGGATT ACGGCGTGCG GCAGCCCTTG GGTGAGTTTA CCCTTGAAGG TGATCTTTCG CAGATTATCG GGCGCTTCGA AAAGGCTGTA CTGGAAAGTC TGATCGGGGA GTATCCAAGT AGCCGGGCGC TGGGCAAGCG GCTGGGTGTT TCACATACAA CCATTGCTAA CAAGTTGCGG GATTATTCGC TGGGCAAATC GAATGAATGA
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Protein sequence | MRIKVHCQNR IGILRDILNL LVEYGINVLR GEVGGDHGNA IYLHCPNLIN LQFQALRPKF ESIAGVFGVK RVGLMPSERR HMELNALLGA LDFPVLSVDM GGSIVAANRT AAQLLGVRVD EVPGIPLARY VEDFDLPELV RANKSRINGL RVKVKGDIFL ADIAPLQSEH DDSEALAGAV LTLHRADRIG ERIYNVRKQE LRGFDSIFQS SRVMAAVVRE ARRMAPLDAP LLIEGETGTG KELLARACHL ASPRGQAPLM ALNCAGLPES MAETELFGYG PGAFEGARAE GKLGLLELTA GGTLFLDGVG EMSPRLQVKL LRFLQDGCFR RVGSDEEVYL DVRVICATQV DLSELCARGE FRQDLYHRLN VLSLHIPPLR ECMDGLEGLV QHFLDQASRQ IGCALPRLAP AAMDKLAHYH WPGNVRQLEN VLFQAVSLCE GGIVKGEHIR LPDYGVRQPL GEFTLEGDLS QIIGRFEKAV LESLIGEYPS SRALGKRLGV SHTTIANKLR DYSLGKSNE
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