Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_3694 |
Symbol | fliF |
ID | 6112653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 4107858 |
End bp | 4109636 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641623480 |
Product | flagellar MS-ring protein |
Protein accession | YP_001750545 |
Protein GI | 170722857 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGAAG CAGTCGTCGA TAACGCCCCC GCCAAAAGTG GCCCGCCAGC GTCCAAACCG CCGCTGTTCG GCATGGCGTT TCTGGAAAAC ATTTCGCAGA TGCCCATGCT GCGTCAGGTC GGCCTGCTGG TCGGGTTGGC GGCGAGCGTG GCGATCGGCT TCGCCGTGGT GCTGTGGTCG CAGCAGCCGG ACTACCGCCC GCTGTATGGC AGCCTGGCGG GTATGGACAC CAAGCAGGTC ATGGATACCC TGGCCGCTGC AGACATTCCC TACAATGTCG AGCCCAATTC CGGTGCTCTG CTGGTCAAGG CCGACGACCT CTCCCGTGCG CGCCTGAAAC TGGCAGCTGC CGGCGTTGCG CCAAGCGACG GCAACGTCGG CTTCGAACTG CTCGACAAGG AGCAGGGCCT GGGTACCAGC CAGTTCATGG AAGCCACCCG TTACCGCCGC AGCCTGGAAG GCGAGTTGGC GCGTACGGTC TCCAGCCTGA ACAACGTCAA AGCAGCGCGC GTGCACCTGG CGATCCCGAA AAGCTCGGTG TTCGTGCGCG ATGAGCGCAA GCCAAGCGCC TCGGTCCTGG TCGAACTGTA CCCGGGCCGT TCGCTGGAAG CCGGCCAGGT GATGGCGATC GTCAACCTGG TCGCCACCAG TGTGCCCGAG CTGGACAAGT CGCAGGTCAC CGTGGTCGAC CAGAAAGGCA ACCTGCTCTC CGACCAGTTG CAGGACACGG CGTTGACCAT GGCTGGCAAG CAGTTCGACT ACAGCCGCCG CATGGAAGGC ATGCTCACCC AGCGTGTGCA TAACATCCTG CAACCGGTAC TGGGCAACGA TCGCTACAAG GCCGAGGTGT CGGCGGACCT TGACTTCAGT GCAGTGGAAT CCACTTCCGA GCAATTCAAC CCGGACCAGC CGGCGCTGCG CAGCGAGCAG TCGGTCAACG AGCAGCGCGC CAGCAGTTCG GGGCCGCAAG GTGTGCCTGG CGCGCTGAGC AACCAGCCGC CCGCAGGTGC AGCAGCGCCT GAAAACGCCA CCGCCGCAGC CCCTGCTGCC GGTGCCATCC AGCCTGGCCA GCCGCTGGTG GATGCCAACG GCCAGCAGAT CATGGACCCG GCCACCGGCC AGCCAATGCT CGCGCCATAC CCTGCCGACA AGCGTCTGCA GACCACCAAG AACTTCGAGC TGGACCGCTC GATCAGCCAC ACCCGCCAGC AGCAGGGTCG CCTGACTCGT CTGTCGGTGG CGGTAGTGGT CGATGACCAG GTCAAGGTCG ACGCTGCCGG CGAGACCACC CGTGCGCCGT GGGGCGCCGA AGACCTGGCG CGCTTCACCC GCCTGGTACA GGACGCCGTT GGCTTCGATG CCAGCCGTGG CGACAGCGTG ACGGTGATCA ACGTGCCGTT CGCCGCCGAT CGCGGCGAAG AAATCGCCGA CATCGCGTTC TATCAGCAGC CGTGGTTCTG GGACATCGTC AAGCAGGTGT TGGGCGTGGT GTTCATCCTG GTACTGGTGT TCGGCGTGCT GCGCCCGGTA CTCAACAACA TCACTGGCGG CGGCAAGCAG GCTGCTGCAA CGGACAGCGA CATGGAGCTG GGCGGCATGA TCGGTCTGGA TGGCGAACTG GCCAACGACC GCGTCAGCCT GGGTGGCCCG ACAAGCATTC TGTTGCCAAG CCCGAGCGAG GGTTACGAGG CACAGCTCAA CGCAATCAAA GGCCTGGTGG CCGAAGACCC GGGCCGTGTC GCCCAGGTCG TGAAAGAGTG GATCAACGCC GATGAGTGA
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Protein sequence | MAEAVVDNAP AKSGPPASKP PLFGMAFLEN ISQMPMLRQV GLLVGLAASV AIGFAVVLWS QQPDYRPLYG SLAGMDTKQV MDTLAAADIP YNVEPNSGAL LVKADDLSRA RLKLAAAGVA PSDGNVGFEL LDKEQGLGTS QFMEATRYRR SLEGELARTV SSLNNVKAAR VHLAIPKSSV FVRDERKPSA SVLVELYPGR SLEAGQVMAI VNLVATSVPE LDKSQVTVVD QKGNLLSDQL QDTALTMAGK QFDYSRRMEG MLTQRVHNIL QPVLGNDRYK AEVSADLDFS AVESTSEQFN PDQPALRSEQ SVNEQRASSS GPQGVPGALS NQPPAGAAAP ENATAAAPAA GAIQPGQPLV DANGQQIMDP ATGQPMLAPY PADKRLQTTK NFELDRSISH TRQQQGRLTR LSVAVVVDDQ VKVDAAGETT RAPWGAEDLA RFTRLVQDAV GFDASRGDSV TVINVPFAAD RGEEIADIAF YQQPWFWDIV KQVLGVVFIL VLVFGVLRPV LNNITGGGKQ AAATDSDMEL GGMIGLDGEL ANDRVSLGGP TSILLPSPSE GYEAQLNAIK GLVAEDPGRV AQVVKEWINA DE
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