| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3672 |
|---|
| Symbol | |
|---|
| ID | 6112631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4087593 |
|---|
| End bp | 4088687 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641623458 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_001750523 |
|---|
| Protein GI | 170722835 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAA ATGTGATCGC ATTGGTTTTT GGGGGGAGGA GCTCAGAGCA CTCAGTGGCG
CTCCGCTCCG CTTCTATGAT TCACGCGGCG CTAATGGCCC TCGGTCACCG TGTGCACTGT
GTGGGGATAG ATCGTGAGGG GAGCTGGAGA TATCAGGGGG AGCCGTGCCA GTTTCCAGGC
GAGGTTGATC GGTCGGCGCC TTTGATTTCA ATACGTCCAG GTCATCCCTC GCTCTCGTAC
ACAACTCAAG GGAGCGACAC GGTGGAGATT GCGATCGATC TGCTCTTTCC GGCACTGCAT
GGTCGGTGGG GGGAGGATGG GACGATTCAA GGATTGGCAG CGATGTGCGG TTTGCCTTGT
GTGGGCTCCG GGGTGCTGGG TTCAGCAATG TCCATGGATA AGGATGTTAC GAAGAGAATG
CTCCAGTCTT CTGGGCTAGT TGTGGGGCCA TGGAGGGCCA TGAATTTCAT GCGCCCCTGG
GAAGAACTGG TCGAGTGCCT GGGTAGCAGC ACGCTCTTCG TGAAGCCCGC TAATTCGGGG
TCATCGATTG GTGTATCTAA GGTATCCAAT GCCTTGGAGT ATGCTGAGGC ATTTGCTATT
GCAGCATGTC AAGACGCAAA GGTGCTTGTG GAGGCTGAAA TCTGTGGAAG AGAGATAGAG
TGTGGTGTGC TCGAACTTGA GGAAGGCTTG ATCGCCTCGG TGGTGGGTGA AATACTTAAA
AAGGAAGGGC AGGCATATTA CGATTATCAG GCGAAATATG ATTCTAAAAG CGGAGCAGAT
ATTCGTGTGC CAAGCTTATT GGCACCGGAC ATTGTCGAAC GCATTCAGGA TTTATCCGTT
CAAGCATTCA GATGCCTTGA ACTGAAGGGA TACGCCAGGG TGGATTTTTT CTTGACAGAG
GATGGTGCAA TTATTCTCAA TGAGGTCAAT ACGTTACCCG GATTTACAGG TTCCAGTATG
TACCCGAAAA TGTTTGAGTG CTCCGGCTAT CCCCCTGAGA AGCTAGTAGG AGCGCTGGTG
GAATATGCGC TCTCGTCAGC ATCGAAGGAC CGTTTTAAGG CGCGTCCTGT CGACGCCGTG
TCTCCAGAAA CGTAA
|
|---|
| Protein sequence | MKQNVIALVF GGRSSEHSVA LRSASMIHAA LMALGHRVHC VGIDREGSWR YQGEPCQFPG
EVDRSAPLIS IRPGHPSLSY TTQGSDTVEI AIDLLFPALH GRWGEDGTIQ GLAAMCGLPC
VGSGVLGSAM SMDKDVTKRM LQSSGLVVGP WRAMNFMRPW EELVECLGSS TLFVKPANSG
SSIGVSKVSN ALEYAEAFAI AACQDAKVLV EAEICGREIE CGVLELEEGL IASVVGEILK
KEGQAYYDYQ AKYDSKSGAD IRVPSLLAPD IVERIQDLSV QAFRCLELKG YARVDFFLTE
DGAIILNEVN TLPGFTGSSM YPKMFECSGY PPEKLVGALV EYALSSASKD RFKARPVDAV
SPET
|
|---|
| |