Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_3667 |
Symbol | fliA |
ID | 6112626 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 4081416 |
End bp | 4082156 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641623453 |
Product | flagellar biosynthesis sigma factor |
Protein accession | YP_001750518 |
Protein GI | 170722830 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0670648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCGA GCGGGTTCAA GATGTACAGC AAGGCGTCCA AGGACGCCCA GTACGATCTG GTTGAACGCT ACGCGCCGCT GGTCAAGCGC ATTGCCTACC ACCTGCTGGC GCGCCTGCCT GCCAACGTGC AGGTGGAAGA CCTGATCCAG GCCGGCATGA TCGGCTTGCT TGAGGTGGCC AATAAATACG ACGCCAGCAA GGGTGCCAGC TTTGAAACCT ACGCCGGCAT CCGCATCCGC GGCGCCATGC TCGACGAGGT GCGCAAAGGT GACTGGGCAC CGCGTTCGGT GCACCGCAAC ACGCGCATGG TCAGCGATGC GATGCGCGCT GTGGAAGCAA GAACCGGCCG CGACGCTAAA GATCATGAAG TTGCGGCCGA ACTCAAGTTG AGTCTCGATG ATTACTACGG GATTTTGAAC GATACCCTGG GTAGCCGCCT GTTCAGCTTT GACGACCTGT TACAGGACGG CGAGCACGAA GGGTTGCACG AGGAGGGCGC CAGTGGCCAG GTCGAGCCTT CACGCGACCT GGAAGACGAG CGCTTCCAGG CTGCCCTGAC CGATGCCATT GCCAACCTGC CGGAGCGCGA GCGGCTGGTG CTGGCGCTGT ACTACGACGA AGAGCTGAAC CTCAAGGAAA TCGGTGAGGT ACTGGGGGTC AGCGAATCGC GTGTCAGCCA GCTGCACAGC CAGTGCGCCG CGCGTTTGCG CAGCCGTCTT GGGGAATGGC GGGCGCGTTG A
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Protein sequence | MSASGFKMYS KASKDAQYDL VERYAPLVKR IAYHLLARLP ANVQVEDLIQ AGMIGLLEVA NKYDASKGAS FETYAGIRIR GAMLDEVRKG DWAPRSVHRN TRMVSDAMRA VEARTGRDAK DHEVAAELKL SLDDYYGILN DTLGSRLFSF DDLLQDGEHE GLHEEGASGQ VEPSRDLEDE RFQAALTDAI ANLPERERLV LALYYDEELN LKEIGEVLGV SESRVSQLHS QCAARLRSRL GEWRAR
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