| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3648 |
|---|
| Symbol | |
|---|
| ID | 6112607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4062463 |
|---|
| End bp | 4064451 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641623434 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_001750499 |
|---|
| Protein GI | 170722811 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCGG CGTTGGTGAT CCCTGAACTT GGCCAATTGG CTATGATCCT GGCGATCTGT
TTCGCCGTTG TGCAGGCGAC CCTGCCGTTG CTCGGCGCCT GGCGCGGCGA CAGTCTGTGG
ATGAGCCTGG CACGCCCGGC GGCCTGGGGC CAATTTGCCT TCCTGGCCTT TGCCTTCGCT
TGCCTGACCC ACGCCTTCAT GACCGACAAC TTCTCGGTTG CGTACGTGGC CAGCAACTCC
AACAGCGCCT TGCCCTGGTA CTACAAGTTC AGTGCCGTGT GGGGCGCGCA TGAAGGCTCG
TTGCTGCTGT GGGCGCTGAT TCTCGGTGGC TGGACCTTCG CCGTGTCGGT CTTCTCGCGC
CAGTTGCCGC AAGTGATGCT GGCGCGGGTG CTGGCGGTGA TGGGCATGAT CAGTGTGGGC
TTCCTGAGCT TTTTGATCAT CACCTCCAAC CCGTTCCAAC GTTTGCTGCC GCAAGTGCCG
ACCGATGGCC GTGACCTCAA CCCGCTGCTG CAGGACTTTG GCCTGATCGT TCACCCGCCG
ATGCTATACA TGGGCTATGT GGGCTTTTCG GTGGCCTTCG CCTTCGCCAT CGCTGCGCTG
CTGGGCGGGC GCCTGGATGC AGCGTGGGCG CGCTGGTCGC GGCCCTGGAC CATCATTGCC
TGGGCGTTCC TCGGCGTGGG CATCACCTTG GGCTCCTGGT GGGCCTATTA CGAACTGGGC
TGGGGCGGCT GGTGGTTCTG GGACCCGGTG GAAAACGCCT CTTTCATGCC CTGGCTGGTA
GGCACGGCAC TGATCCACTC GCTGGCGGTG ACGGAAAAAC GTGGCGTGTT CAAGAGCTGG
ACTGTGCTGC TGGCGATTGC CGCGTTCTCG CTTAGCCTGC TGGGGACGTT CCTTGTGCGC
TCCGGCGTGC TGACCTCGGT GCATGCGTTC GCCTCCGACC CGTCACGTGG CGTGTTCATC
CTGATCTTCC TGCTGTTCGT GGTCGGTGGT TCGCTGACCC TGTTCGCCCT GCGTGCCCCG
GTGGTCAAAA GCCAGGTGGG CTTTTCCCTG TGGTCGCGCG AAACGCTGCT GCTGGCCAAC
AACCTGGTGC TGGTGGTGGC GGCTTCGATG ATCCTGCTCG GCACCCTCTA CCCGTTGGTA
CTCGATGCCC TGACCGGGGC CAAGCTGTCG GTAGGCCCGC CATATTTCGA TGCCTTGTTC
CTGCCGCTGA TGGCACTGCT GATGGTGGTG CTCGGCATCG GTGTGGTGGT GCGCTGGAAG
GACACTCCTG GCAAGTGGCT GGCGAGCATG ATGACGCCGG TACTGATCGC GAGCGCAGTG
CTGGCGCCAG TGGCCGGTTT CATCGTCGAC GACTTCGACT GGCCGACCCT GACCGCCTTT
GCACTGGCTG CCTGGGTGGT GCTCAGCGGG TTGCGCGACA TTTTTGACAA AACCCGCCAC
AAGGGCTTGG CCAAAGGCGT GCGTGGCCTG ACGCGCAGCT ACTGGGGCAT GCAGCTGGCG
CACTTGGGGC TTGCGGTGTG CGCCCTTGGC GTGGTGCTGT CGAGCAACAA CAGTGCCGAG
CGTGACCTGC GCCTGGCCCC GGGTGAAAGC GTGGAGCTGG GTGGTTATCA GTTCCTGTTC
CAAGGCGCCA AGCACTTCGA AGGGCCGAAC TTCATTTCCG ACAAGGGCAC CGTCGTCGTC
AGCCGCGATG GCCGTGAAGT GACCACGTTG CACCCCGAGA AGCGGCTCTA TACGGTGCAG
CAGTCGATGA TGACCGAGGC CGGCATCGAT GCCGGTTTCA CCCGCGACCT GTACGTTGCC
TTGGGCGAGC CGCTGGACAA CGGCGCCTGG GCCGTGCGCG TGCACATCAA GCCTTACGTC
CGCTGGATCT GGCTGGGCGG TCTTTTGACC GGCCTGGGCG GTTTGCTGGC GGCCCTCGAC
CGACGCTACC GCGTCAAGGT CAAGACCCGG GTGCGTGATG TCCTGGGCGT GTCTGGAGCA
GCTGCATGA
|
|---|
| Protein sequence | MNAALVIPEL GQLAMILAIC FAVVQATLPL LGAWRGDSLW MSLARPAAWG QFAFLAFAFA
CLTHAFMTDN FSVAYVASNS NSALPWYYKF SAVWGAHEGS LLLWALILGG WTFAVSVFSR
QLPQVMLARV LAVMGMISVG FLSFLIITSN PFQRLLPQVP TDGRDLNPLL QDFGLIVHPP
MLYMGYVGFS VAFAFAIAAL LGGRLDAAWA RWSRPWTIIA WAFLGVGITL GSWWAYYELG
WGGWWFWDPV ENASFMPWLV GTALIHSLAV TEKRGVFKSW TVLLAIAAFS LSLLGTFLVR
SGVLTSVHAF ASDPSRGVFI LIFLLFVVGG SLTLFALRAP VVKSQVGFSL WSRETLLLAN
NLVLVVAASM ILLGTLYPLV LDALTGAKLS VGPPYFDALF LPLMALLMVV LGIGVVVRWK
DTPGKWLASM MTPVLIASAV LAPVAGFIVD DFDWPTLTAF ALAAWVVLSG LRDIFDKTRH
KGLAKGVRGL TRSYWGMQLA HLGLAVCALG VVLSSNNSAE RDLRLAPGES VELGGYQFLF
QGAKHFEGPN FISDKGTVVV SRDGREVTTL HPEKRLYTVQ QSMMTEAGID AGFTRDLYVA
LGEPLDNGAW AVRVHIKPYV RWIWLGGLLT GLGGLLAALD RRYRVKVKTR VRDVLGVSGA
AA
|
|---|
| |