| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3600 |
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| Symbol | ligA |
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| ID | 6112559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4005606 |
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| End bp | 4007936 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641623386 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001750451 |
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| Protein GI | 170722763 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.278075 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCG AATCCCGAAT CCACGCACTG CGCGCCGAAC TCGACCAGCA CAACTACCGC
TACTACGTAC TCGACGAGCC CAGCGTGCCG GATGCCGAGT ACGACCGCCT GTTCAACGAG
CTCAAGGCCC TCGAAGCCGA ACACCCGCAC CTGGTCACGC CCGACTCGCC CACTCAGCGC
GTCGGCGGTG CCGCCTTGGC CGCGTTCAGC CAGGTGCGCC ACGAAGTACC CATGCTCAGC
CTGGGTAACG CCTTCGAGGA AGCCGACCTG CGTGAATTCG GCCGCCGCGT AGTGGACGGC
CTCGACCAGC CAGGCGCGGT CGACTACAGC TGCGAGCCCA AGCTCGATGG CCTGGCGGTC
AGCCTGCTTT ATCGCGATGG TCAGCTGGTC CAGGGCGCGA CCCGGGGTGA CGGCACCACC
GGCGAAGACA TCAGCGCCAA TGTACGTACC GTGCGCAACA TCCCGCTCAA GCTGCAGGGC
AAAGGTTGGC CCGCTGTGCT CGAAGTGCGG GGTGAAGTGT TCATGAGCAA GGCGGGTTTC
GACCGCCTTA ATGCCGCACA GGCCGAAGCC GGGGGCAAGA CCTTCGCCAA CCCGCGCAAC
GCAGCTGCCG GTAGCCTGCG CCAGTTGGAC TCGAAGATCA CCGCCAGCCG CCCGCTGGAA
TTCTGCTGCT ATGGCGTTGG CCAGGTCTCG GCAAGCATTG GTGAAAGCCA TATCGGTATC
CTCGAGCAGC TCAAGGCATG GGGCTTGCCG ATCAGTCGCG AGCTCAGGCA TGCGGCTGGT
ATCGAGGAGT GCCTGGCTTA CTACCGCGAT ATCGGCGAGC GGCGCAACAG CCTGCCGTAC
GAAATCGATG GGGTAGTGTT CAAGGTCAAC AGCCTGGCCT CCCAGCGCGA GCTGGGCTTT
CGCGCCCGCG AGCCACGTTG GGCCATCGCC CATAAGTTCC CGGCCATGGA AGAGCTCACC
GAGGTGCTGG ATGTCGAATT CCAGGTCGGG CGTACCGGTG CGGTCACGCC GGTTGCGCGG
CTCAAGCCGG TCAAGGTGGC TGGCGTGACC GTGTCCAACG CCACCCTGCA CAACATGGAC
GAGATTGCCC GCCTGGGCCT GCGCATCGGC GATACGGTGA TCATCCGCCG TGCCGGTGAC
GTGATCCCGC AAGTCATGCA GGTGGTGCTT GAGCGCCGTC CTGAAGACGC CCGCCCGGTG
CAGGTGCCAA GCGCGTGCCC GGTGTGTGGC TCCCAGGTCG AGCGTACCCA GCTGGTCAAG
CGCAGCAAAG GCAAGGAAAC CACCAGCGAA GGCGCGGTGT ACCGCTGTGT CGGCCGCTTG
GCCTGTGGTG CCCAGCTCAA GCAGGCGATC ATTCACTATG TTTCGCGGCG GGCCATGGAT
ATCGACGGCC TGGGCGAGAA GAGCGTTGAG CAGTTGGTGG ACGAAGGCCT GATCGGTTCG
CCGGCGGACC TCTACAAGCT GCAATTCGAC CAGATCGTCG GGCTGGAGGG GTTTGCCGAA
GTCTCCAGCA AGAAACTGCT GGATGCCATC GAGGCCAGCA AGCGCCCGAG CCTGGCGCGC
TTCATCTATG CCTTGGGCAT CCCGGATGTG GGCGAGGAGA CCGCCAAGGT GCTGGCCCGC
TCGCTGGGCA GCCTGGCACG GGTGCAGCAG GCGTTGCCGC AGGTGCTGAC GTACCTGCCG
GACATTGGTC TGGAAGTGGC CTACGAGATC CACAACTTCT TTGAAGACGA ACACAACTGC
AAGGTCATTG AGCAGTTGCT CGGTTGCGGC ATGCAATTGC AGGACGAAGG TGAGCTGGCT
GCCGAATTCG CTGCCAGCAC TACCCTGGCC GGGATGATCG CCAAGCTCGA CATCGCTTCG
GTCGGGCCCA CGGGCGCGGA AAAGCTGGTC GCCAAGCTGG ACAGCCTGGA CAAGATCATC
GCGGCCGACG GCATCGACCT GCGTCAGGCG CTGGCAGCGA AACAGGCCGA AGCCGTGCGC
GAATTTTTCA AGGACGAGGC CAACCAGAAA CTGGCCCGAG ACATCGAGGC TCAGTTGCTG
GCGTTCGGCA TGCACTGGAA CAGCGAAAAG AAGGTCGCCG AGGGCTTGCC CCTGGCTGGC
CAGACCTGGG TGCTGACCGG CACGTTGGAG CGCATGAGCC GCGACATCGC CAAAGAGAAG
CTGGAAAGCC TGGGGGCCAA GGTGGCCGGT TCGGTGTCGG GCAAGACACA CTGCGTGGTC
GCTGGCCCTG GTGCCGGTTC CAAGTTGGCC AAGGCCAGTG AGCTGGGGGT CAAGGTGCTG
GATGAGGATG CGTTCGTCGT GTTCCTGGAC GAGCAGGGCA TTGCCATCTG A
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| Protein sequence | MNAESRIHAL RAELDQHNYR YYVLDEPSVP DAEYDRLFNE LKALEAEHPH LVTPDSPTQR
VGGAALAAFS QVRHEVPMLS LGNAFEEADL REFGRRVVDG LDQPGAVDYS CEPKLDGLAV
SLLYRDGQLV QGATRGDGTT GEDISANVRT VRNIPLKLQG KGWPAVLEVR GEVFMSKAGF
DRLNAAQAEA GGKTFANPRN AAAGSLRQLD SKITASRPLE FCCYGVGQVS ASIGESHIGI
LEQLKAWGLP ISRELRHAAG IEECLAYYRD IGERRNSLPY EIDGVVFKVN SLASQRELGF
RAREPRWAIA HKFPAMEELT EVLDVEFQVG RTGAVTPVAR LKPVKVAGVT VSNATLHNMD
EIARLGLRIG DTVIIRRAGD VIPQVMQVVL ERRPEDARPV QVPSACPVCG SQVERTQLVK
RSKGKETTSE GAVYRCVGRL ACGAQLKQAI IHYVSRRAMD IDGLGEKSVE QLVDEGLIGS
PADLYKLQFD QIVGLEGFAE VSSKKLLDAI EASKRPSLAR FIYALGIPDV GEETAKVLAR
SLGSLARVQQ ALPQVLTYLP DIGLEVAYEI HNFFEDEHNC KVIEQLLGCG MQLQDEGELA
AEFAASTTLA GMIAKLDIAS VGPTGAEKLV AKLDSLDKII AADGIDLRQA LAAKQAEAVR
EFFKDEANQK LARDIEAQLL AFGMHWNSEK KVAEGLPLAG QTWVLTGTLE RMSRDIAKEK
LESLGAKVAG SVSGKTHCVV AGPGAGSKLA KASELGVKVL DEDAFVVFLD EQGIAI
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