| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3481 |
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| Symbol | |
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| ID | 6112439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 3835413 |
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| End bp | 3837191 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641623268 |
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| Product | diguanylate phosphodiesterase with GAF sensor(s) |
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| Protein accession | YP_001750333 |
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| Protein GI | 170722645 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATGA ATGTCGCCCC TATGCCGTCC AATGAAGAGC AGCGCTTGGC TGCGGTCGCC
GAATGGTGTG TTGCGCACCA GGACTGCAGC ACCGAGCTGC GCACACTGGT CGAATGGGCC
GGCCGTTACT TCAATGCCCC GATGTGCCTG ATCTCGATCG TCAGCGAGTG CCAGCAGTGG
TTCATGGCCA AGACCGCATT GGAGGCCGAC AGCACGCCGC GGGATGTGGC GTTCTGTGCC
CATACCATTC TTCAGGCGCA GCCGCTGGAA GTACTGGATG CGACGCAGGA CCCGCGCTTT
GCCGAAAACC CGCTGGTCAC CGGTGCGCCC GGCATTCGCT ACTATTGCGG CGCTCCGCTG
CTGGTGGACA AACAGGTCGC GATTGGCAGT TTCTGCATCA TCGATACGGT CCCGCGTGAG
GCCATGGATG ATGCTCAGCG CGGTATGTTG CAGGCGTTCG CAGACATGGC AGTGCAGATC
ATTGCCGGTA TACGCCATCG AAATTTCTAC GACCAGCCGA CTGGGCTGTT CAATCGGGTA
AAACTTGAAT GCGACGTGCA GACGCGTCTT GAACGCCATG ATGCCCTGAC CGTGGTGGTG
TTCGACATCA TGCCGGCGCA GGTGCTTACG CACATGATCA AGGTGTTGGG CTACAACTTC
GCCCACGATC TGACCCTTCA GGTGAAAGAC CTGATCGTCA GCCAGCTTGA CCCGGACCTT
GCGTTGTACA AGATCAGCCC CACCCGGTTT GCCGTCATCG TGCATCAGCA CCCTCTGGCA
ATGTGCGCGC GGGTAATCGG TGCGCTGAGC GACCCTGTGC AGTGTCATCA GATTCCCGTG
CTCCTGGATG CTGCGGTCGG TATTTCGCCG GTCACCCGCT GCGACGACGA TGGCAGCCTT
GACTGGTTGC GCCGTGCGGT GGGCGCCGCT GACGCAGCCC GTGGCAACCC TAGCCGCTGC
GCGCACTATC AGCCGGAGGT GGACGCCGCG CAGCGCAGGG CCTTCTCCTT GCTGTCCTCA
CTGGGGGCAG CGCTGCAGAG CGATGACGAG CTCAGCCTGC ACCTGCAGCC GCGAGTCGAA
CTGCAAGGCC ATACCTGCAA CAGCGCTGAA GCGCTGTTGC GCTGGCGTCA TCCGCAATTG
GGGGATATTT CCCCTGCCGA GTTCATCGCC CTGGCCGAGA AAACTGCGCT GATAGCCTCG
ATCAGCCTGT GGGTGATGCG CGCGGTGTTG AACATCCTGC AACACGCTCA GGCGCCGGAC
TTGCGCATCA GTATGAATGT CACCGCGCGC GACCTGGAGA ACGCAGTATT CATGGACACC
TTGCTTGCCG AGCTCCAGCA CAGGGCCATC GCGCCATGGC GCCTGCAACT GGAGTTCACT
GAAAGCGTGC TGATCGAGCA ACCCGAAGAA GTGCGCCGGC AGTTGCTGCG TGCACGTCAG
GCCGGGATCG ACATCGCCAT CGATGACTTT GGTACCGGCT ATAGCAACTG GGCCTACCTC
AGCCGCATTC CTGCCACCCT AGTGAAACTG GACCGCTCGT TGATCCAGAA AGCCACGCAC
AGTGCCAAGG ACCTCCTATT GGTGCAGTCG CTGGTGGGGT TGGCTAACCA GCTCGGTTAC
CAGGTTGTGG CCGAAGGCAT CGAAACCGCT GAACAGCTCA CCTGTGCCAA GGCCTGGGGC
TGTACCCAGG CGCAGGGCTA TTACCTGGCA AGGCCCATGC CACTGGCCGC CTTCCAGACG
TGGTACTGCA ACAACCGGCT CCGCAGGTCG CAGATTTGA
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| Protein sequence | MNMNVAPMPS NEEQRLAAVA EWCVAHQDCS TELRTLVEWA GRYFNAPMCL ISIVSECQQW
FMAKTALEAD STPRDVAFCA HTILQAQPLE VLDATQDPRF AENPLVTGAP GIRYYCGAPL
LVDKQVAIGS FCIIDTVPRE AMDDAQRGML QAFADMAVQI IAGIRHRNFY DQPTGLFNRV
KLECDVQTRL ERHDALTVVV FDIMPAQVLT HMIKVLGYNF AHDLTLQVKD LIVSQLDPDL
ALYKISPTRF AVIVHQHPLA MCARVIGALS DPVQCHQIPV LLDAAVGISP VTRCDDDGSL
DWLRRAVGAA DAARGNPSRC AHYQPEVDAA QRRAFSLLSS LGAALQSDDE LSLHLQPRVE
LQGHTCNSAE ALLRWRHPQL GDISPAEFIA LAEKTALIAS ISLWVMRAVL NILQHAQAPD
LRISMNVTAR DLENAVFMDT LLAELQHRAI APWRLQLEFT ESVLIEQPEE VRRQLLRARQ
AGIDIAIDDF GTGYSNWAYL SRIPATLVKL DRSLIQKATH SAKDLLLVQS LVGLANQLGY
QVVAEGIETA EQLTCAKAWG CTQAQGYYLA RPMPLAAFQT WYCNNRLRRS QI
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