| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3479 |
|---|
| Symbol | |
|---|
| ID | 6112437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 3832595 |
|---|
| End bp | 3833947 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641623266 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001750331 |
|---|
| Protein GI | 170722643 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACCG CCATCCAAGC GACCAACGCC TGGCGCATCC TGTTCCTGCT GTTCCTGGCC
AACCTGTTCA ATTTCTTTGA TCGCACGATA CCCGCCATCA TCATCGAACC GATTCGCTTG
GAGTGGCATC TGAGCGACTT CCAGATCGGC CTGATCGGCA CAGCCTTCAC GCTGGTCTAT
GCCATCGCTG GCCTGCCATT GGCACGGCTG GCCGACACCG GCTCGCGCAG CCGGCTGATG
GGCTGGGGCC TGATGGCGTG GAGCGGGCTG ACGGCAGTCA ACGGCATGGT TGGGAGCTTC
TGGAGCTTTC TGCTGGTGCG CATGGGGGTG GGCATCGGTG AAGCCAGCTA TGCGCCCGCC
GCCAATTCGC TTATCGGAGA CCTGTTCCCT GCCGAGCGGC GGGCAAGGGC GATGGGTATC
TTCATGCTCG GCCTGCCGCT GGGCCTGTTG CTTGCCTTCT TCACCATCGG CGCCATGGTG
CAGGCCTTCG GCAGCTGGCG CGCACCTTTC TTCATTGCCG CAGTACCGGG TGTGGTGCTG
GCGCTGTTCC TGTTCCTGAT TCGCGAACCG GCACGCGGCG CGGCAGAAAC CGTAGCCGTC
TCCCAGGCTC CACTGGACCG GCCCCTGCGC CGCGTACTTA GCGTGCCCAC CTTCGCCTGG
CTGGTGCTCG CCGGCCTTAC GTTCAACTTT GCTTCGTACG CCTGCAACTC GTTCATGGTG
CCCATGCTGC AGCGGTACTT CGAGCTGCAA CTGCAACAAG CCGCAGTCGC CACCGGGGTC
ATAGTCGGTG TGACTGGCTT GGTAGGCCTT ACCCTTGGTG GCTGGGTGGC CGACAAGGTG
CATCAGCGCT TTGCCAATGG CCGGCTGATG TTCGCCGTGC TGAGCATGCT GGTCGCCACG
CTGGCCACCG CCTGGGCGCT GCACGCCGGG CGGATCGAGC TGGGCCTGTT CGTGGCACTG
TTCGGCGTGG GCTGGCTGTT CTCGTACAAC TTCTACACCT GCGTGTACAC CGCCATCCAG
GACGTGGTGC AGCCCCGCCT GCGTGCCACG GCCATGGCGC TGTATTTTGC CGGGCTGTAT
CTGCTTGGCG GTGGATTGGG GCCGGTGGTG GTCGGCGGGC TGTCGGACCA TTTTGCCGTT
GCAGCCATGA ACGCAGCAGG GGAGGCGATG ATGAGCGAGG CGTTCAAAGC CCAGGGGTTG
CACGACGCGA TGTACCTGAT ACCGGTGGCG CTTATGTTGA CCATGGTGTT TCTGCTGGCC
GCGTCGCGGT GTTTCAGCCG CGATGCGCAG CGGATGCGGG AGGGGATGGT GGCTGACAGC
GAAGCAGTGG AGGGCCGCGC TGTCCAAGCC TGA
|
|---|
| Protein sequence | MPTAIQATNA WRILFLLFLA NLFNFFDRTI PAIIIEPIRL EWHLSDFQIG LIGTAFTLVY
AIAGLPLARL ADTGSRSRLM GWGLMAWSGL TAVNGMVGSF WSFLLVRMGV GIGEASYAPA
ANSLIGDLFP AERRARAMGI FMLGLPLGLL LAFFTIGAMV QAFGSWRAPF FIAAVPGVVL
ALFLFLIREP ARGAAETVAV SQAPLDRPLR RVLSVPTFAW LVLAGLTFNF ASYACNSFMV
PMLQRYFELQ LQQAAVATGV IVGVTGLVGL TLGGWVADKV HQRFANGRLM FAVLSMLVAT
LATAWALHAG RIELGLFVAL FGVGWLFSYN FYTCVYTAIQ DVVQPRLRAT AMALYFAGLY
LLGGGLGPVV VGGLSDHFAV AAMNAAGEAM MSEAFKAQGL HDAMYLIPVA LMLTMVFLLA
ASRCFSRDAQ RMREGMVADS EAVEGRAVQA
|
|---|
| |