| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3478 |
|---|
| Symbol | |
|---|
| ID | 6112436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 3830074 |
|---|
| End bp | 3832551 |
|---|
| Gene Length | 2478 bp |
|---|
| Protein Length | 825 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641623265 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001750330 |
|---|
| Protein GI | 170722642 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAGG TATTCAAGCG TGGTCGTCTG GCGACCGCGG TAAAAGTCGC GCTGCTGGCC
GTAACCACTG TCGGAGCCTG GTCCACAGCA ACGGTCGAGG CAGCCGTGGC GACCCAGCAC
AGCGCAGTGC GGTCGTTCGA CATCCCTGGT GGCAGCCTGA CCGAAGTCCT TGGTCACTTC
GCCAGCGCGG CGGGGGCGGC GATTTCGTTT GATGCCAGGC AAACAGACGG CTTTAGCTCC
TCTGGGCTCA AAGGTGCCTT CGGCGTCATT GAAGGCTTTA GCCGGATTCT GGCCGGCAGC
GGCCTGCAAG CCGAGCCACA AGCCAACGGC ACGTATGTGC TGCGGGAAGT GCCTTCCGCT
GGTTCGGCAA TGGAACTTGG AGCCACCAAC ATCACTGGCC AGGTGCTGGG CGCCACGACA
GAGAACAGCG GCTCGTACAC CACGGGCGCG GTCACCATCG GCAAAGGTGA GCACTCGCTC
AAAGAGACGC CACAGTCGGT CACGGTAATG ACCCGCAAGA TGATGGACGA CCAGAACCTG
TACACCATCG ACCAGGTCAT GGAGAAGACG CCCGGTATTA CTGTGTACGA CTCGACCATG
GGTGGCAAAT ACTTCTATTC ACGCGGGTTC CGCATGTCGG GCCAGTATCA GTACGACGGT
GTGCCGCTGG ACATGGGCAA CCTCTATGTC CAGGCCGACA GTTTCAGCAG CGACATGGCG
TACTACGACC GGGTCGAAGT ACTGCGCGGC GCAGCGGGCA TGATGAAAGG CTCCGGAGGC
ACTGCGGGCG GGGTGAATTT CGTGCGCAAG CGCGGCCTGG CAGCTGCGCA TACCGACATC
ACCCTGTCCG GCGGCAGTTG GGACAACTAC CGCGGCCAGC TGGACACCGG CGGCCCGCTG
AACGCATCCG GCACTCTGCG CGGCCGGGCG GTGATCGCCG AACAGAGCCG CCACTACTTC
GTGGACGACG CCAACCGCAA AGATCAGGTG TATTACGGTG CGCTCGACTT CGATCTGAAT
GCCGATACCA CCCTGGGGCT GGGCGTTGCC TATGAAGACG TGGATGCCAA CCCATGCTGG
GGTGGCCTGC CGCGCTATCG GGATCGCAGC GACTTGAAGC TGAGCCGCTC AACCTGCCTG
GACCCCTCAT GGAACACCTG GCGCAGCCAG CGCACCACCG TGTTCAGTGA CGTGTCCCAT
CAGCTTGACG AAGACTGGAA ACTCAAGGTT GCCAGCGTCT ATACGAAGAA CACCCAAGAC
ATCAAGTACG CGTTTGCCTC AGGTGCAGTG ACGCCCGGTA CCAATACCAC TGGCATGCTG
GGCAGCATGT ATGACTACGA CCAGGTCGAT TACGGCCTGG ACGCCTACGT CGATGGCACA
TTCGATGCGT TTGGCCAACA ACACGAACTG GTGCTGGGCA TGAATGCGAG CCGTTCGAAC
AAGGACGACT TCTACTCAGT GGCCTTTCTG CCGCAGCGCC AGAATGTATT CAACCCCGAC
AAGTTCATCC CTGAGCCCGA CGACAGCTAC TTCATAGACA ACTCATCTCG CGGCGGGCCG
GTGAAGTCCA AGACTACACA AAAAGGCCTC TACTCGACCC TGCGTTTGAA ACTGGCCGAC
CCACTGACCC TGGTGGTTGG CGGCCGGGTG AGCTGGTACA CCTCCACGAC CGACTCCGAC
TTTATCAATA CCGGTACGTC GGAGCATTCC AGCACCCGCG AGACCGGGCA GGTCACGCCC
TTCGCCGGCG TACTGCTGGA CTTGAACGAA AACCTCACCG CTTACGCCAG TTACTCGGAC
ATCTTCACTC CACAAGGCAA TTACCGGTCT GAAGACGGAT CCGCGCTCAA GCCGCTTGTG
GGCCAGAGCT ATGAATTGGG GATCAAGGGG GCCTGGCTGG AGGGGCGACT GAACGGCGCC
TTCAACCTGT TCCGTACTAT TCAGAAAGAC CAGGCGCAGA CCGATTATAA CTCGTCATGC
CCGTCATCCG ATGGTTACTG CTACGTCAAC GCCGGCAAGG TACGTGCGCA AGGTTTCGAG
GCGGAGCTCA GCGGGGAAAT CATCGAGCGC CTGCAACTGC TTGCGGGATA CACCTACACC
CAGACCAAGA CCCTGGACGA CATCGATAGC AGCCTGAACG GTGCGGCGTT CAACAGCTAC
GTGCCTCGGC ATGTGTTGCG CCTGTGGGGC GAGTACACCC TGAGCGGCGC GTTTGAACGG
TTGTCTATCG GTGCCGGGGT CAACGCGCAA AGCGACAACT TCCGCGTCTC GCCCGCCAGT
GGCGAAAAAA TCGACCAGGC AGGCTATGCG ATCTGGAATG GCCGTATCGG TTATCGCATC
GATGACACCT GGTCGGTAGC GCTCAACGGT AACAACCTGT TCGACAAGCG CTACTACACC
AGCATCGGCA CCGAAACCTT CGGCAACTAT TACGGTGAGC CACGCAACTT CATGGTATCG
GTCAAAGCCA GTTTCTGA
|
|---|
| Protein sequence | MSEVFKRGRL ATAVKVALLA VTTVGAWSTA TVEAAVATQH SAVRSFDIPG GSLTEVLGHF
ASAAGAAISF DARQTDGFSS SGLKGAFGVI EGFSRILAGS GLQAEPQANG TYVLREVPSA
GSAMELGATN ITGQVLGATT ENSGSYTTGA VTIGKGEHSL KETPQSVTVM TRKMMDDQNL
YTIDQVMEKT PGITVYDSTM GGKYFYSRGF RMSGQYQYDG VPLDMGNLYV QADSFSSDMA
YYDRVEVLRG AAGMMKGSGG TAGGVNFVRK RGLAAAHTDI TLSGGSWDNY RGQLDTGGPL
NASGTLRGRA VIAEQSRHYF VDDANRKDQV YYGALDFDLN ADTTLGLGVA YEDVDANPCW
GGLPRYRDRS DLKLSRSTCL DPSWNTWRSQ RTTVFSDVSH QLDEDWKLKV ASVYTKNTQD
IKYAFASGAV TPGTNTTGML GSMYDYDQVD YGLDAYVDGT FDAFGQQHEL VLGMNASRSN
KDDFYSVAFL PQRQNVFNPD KFIPEPDDSY FIDNSSRGGP VKSKTTQKGL YSTLRLKLAD
PLTLVVGGRV SWYTSTTDSD FINTGTSEHS STRETGQVTP FAGVLLDLNE NLTAYASYSD
IFTPQGNYRS EDGSALKPLV GQSYELGIKG AWLEGRLNGA FNLFRTIQKD QAQTDYNSSC
PSSDGYCYVN AGKVRAQGFE AELSGEIIER LQLLAGYTYT QTKTLDDIDS SLNGAAFNSY
VPRHVLRLWG EYTLSGAFER LSIGAGVNAQ SDNFRVSPAS GEKIDQAGYA IWNGRIGYRI
DDTWSVALNG NNLFDKRYYT SIGTETFGNY YGEPRNFMVS VKASF
|
|---|
| |