Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_3472 |
Symbol | |
ID | 6112430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 3822629 |
End bp | 3824464 |
Gene Length | 1836 bp |
Protein Length | 611 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641623259 |
Product | extracellular solute-binding protein |
Protein accession | YP_001750324 |
Protein GI | 170722636 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCCAA CGTACCGCCT GCGCCAGCTC GCGGGCAGCC TGCTGCTAGC CTGCCTGAGC CTGCCGGCCA TGGCCGCGCC GCAACACGCA CTGACCCTAT ATGATGAAGC GCCGAAGTAC CCGGCCGACT TCAAGCATTT CGACTACGTC AACCCCGACG CGCCCAAGGG CGGCACCTTC CGCCAGTCCA GTTTCGGCGG ATTCGACAGC CTCAACCCGT TCATCAACAA AGGCGTCGCC GCCGAAAACG TCAGCGCCAT CTACGACACC TTGATGCGCC AGAGCCTAGA CGAGCCGTTC ACCGAGTACG GCCTGGTTGC CGGCAAGATC GAAAAGGCCC CGGACAACAG CTGGGTGCGC TTCTACCTGC GCCCCGAGGC GCGCTTCCAC GACGGCCATC CTATGCGGGC CGAAGACGTG GTATTCACCT TCAACGCCCT GATCAAGGAC GGCGCACCGC TTTACCGCCA GTACTATGGT GATGTTGCCC AAGTCGTCGC CGAAGACCCG CTGCGTGTGC TGTTCACCTT CAAGCACAAG AACAACCGCG AGTTGCCGCT GATCCTCGGC CAGTTGCCCG TGCTACCCAA GCACTGGTAC GAAGGCCGCG AATTCAACCG CGGCAACCTG GAAATCCCGC TCGGCAGCGG CCCGTACAAG ATCACCGAGG TCAAGCCCGG CCGCTCGATC CGCTACGAGC GGGTCAAGGA CTACTGGGCC AAGGACCTGC CGCTCAACCG CGGCCAGTTC AACTTCGACG CAATGACCTT CGACTCCTAC CGCGACAACA CCGTCGCGCT GGAAGCACTC AAGGCCGGCC AATTCGATTA TGGCCTGGAA ACCAGCGCGA AAAACTGGGC CACCGCCTAC AACGTTCCCG CCGTACGCGA TGGCCGCCTG ATCAAGGAAG AGCTGCCCAA CGGCAACCCC ACAGGCATGC AGGGTTTCAT TTTCAACCTG CGTAAACCGG TGTTTCAGGA CATCCGCGTA CGCCAGGCGC TGAGCCTGCT GCTGGACTTC GAGTGGACCA ACAAGCAGTT GTTCAACGGC GCCTACACCC GCACCGGCAG CTATTTCGAA AACTCCGAAA TGGCCGCCCA AGGCCTGCCC TCGCCTGACG AGCTGAAGAT CCTTGAGCCG CTGCGCGGCA AGGTCCCCGA ACAGGTGTTC AGCGAGGCTT TCCACAACCC GCTCACCGAC GGCAGCGGCA TGATCCGCGA ACAGCAGCGC CAGGCCTACA AGCTGCTGAT GGACGCTGGC TGGAAGATCG TCGACGACAA GATGGTCGAC AAGAACGGCA AACCGGTGTC CATCGAGTTT CTGCTGGCCC AGACCGAATT CGAGCGCATC CTGCTGCCGT TCAAACGCAA CCTGGCCGAC CTTGGCATCG ACCTGAACAT CCGCCGCGTT GACGTTTCCC AGTACATCAC CCGCCTGCGC TCGCGTGACT TCGACATGAT CGTCAGTGGC TATCCGCAGT CCAGCTCCCC AGGCAACGAG CAGCGCGAGT TCTGGTCCAG TGCCGCTGCC GACAACCCCG GCAGCCGCAA CTTCATGGGC CTGCGCGACC CGGCGATCGA TCAACTGGTC GAAGCACTGA TCAACGCCGA TTCCCGGCAA AGCCTGATCA ACCACTCCCG CGCCCTGGAC CGCGTGTTGC TGTGGGGCTA CTACGTAATC CCCAACTGGC ACATCAAGAC TTGGCGCGTG GCTTACTGGA ACCACATCGG CCACCCCGAT GTTTCGCCCA AGTACGACAT CGGCATCGAC ACCTGGTGGA TCAAGCCAGA CGTGACGCCA GCCGTGTCTG AAACGCCCGC GCAAGAGGCC AACTGA
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Protein sequence | MMPTYRLRQL AGSLLLACLS LPAMAAPQHA LTLYDEAPKY PADFKHFDYV NPDAPKGGTF RQSSFGGFDS LNPFINKGVA AENVSAIYDT LMRQSLDEPF TEYGLVAGKI EKAPDNSWVR FYLRPEARFH DGHPMRAEDV VFTFNALIKD GAPLYRQYYG DVAQVVAEDP LRVLFTFKHK NNRELPLILG QLPVLPKHWY EGREFNRGNL EIPLGSGPYK ITEVKPGRSI RYERVKDYWA KDLPLNRGQF NFDAMTFDSY RDNTVALEAL KAGQFDYGLE TSAKNWATAY NVPAVRDGRL IKEELPNGNP TGMQGFIFNL RKPVFQDIRV RQALSLLLDF EWTNKQLFNG AYTRTGSYFE NSEMAAQGLP SPDELKILEP LRGKVPEQVF SEAFHNPLTD GSGMIREQQR QAYKLLMDAG WKIVDDKMVD KNGKPVSIEF LLAQTEFERI LLPFKRNLAD LGIDLNIRRV DVSQYITRLR SRDFDMIVSG YPQSSSPGNE QREFWSSAAA DNPGSRNFMG LRDPAIDQLV EALINADSRQ SLINHSRALD RVLLWGYYVI PNWHIKTWRV AYWNHIGHPD VSPKYDIGID TWWIKPDVTP AVSETPAQEA N
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