Gene PputW619_3472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_3472 
Symbol 
ID6112430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp3822629 
End bp3824464 
Gene Length1836 bp 
Protein Length611 aa 
Translation table11 
GC content62% 
IMG OID641623259 
Productextracellular solute-binding protein 
Protein accessionYP_001750324 
Protein GI170722636 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4166] ABC-type oligopeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCCAA CGTACCGCCT GCGCCAGCTC GCGGGCAGCC TGCTGCTAGC CTGCCTGAGC 
CTGCCGGCCA TGGCCGCGCC GCAACACGCA CTGACCCTAT ATGATGAAGC GCCGAAGTAC
CCGGCCGACT TCAAGCATTT CGACTACGTC AACCCCGACG CGCCCAAGGG CGGCACCTTC
CGCCAGTCCA GTTTCGGCGG ATTCGACAGC CTCAACCCGT TCATCAACAA AGGCGTCGCC
GCCGAAAACG TCAGCGCCAT CTACGACACC TTGATGCGCC AGAGCCTAGA CGAGCCGTTC
ACCGAGTACG GCCTGGTTGC CGGCAAGATC GAAAAGGCCC CGGACAACAG CTGGGTGCGC
TTCTACCTGC GCCCCGAGGC GCGCTTCCAC GACGGCCATC CTATGCGGGC CGAAGACGTG
GTATTCACCT TCAACGCCCT GATCAAGGAC GGCGCACCGC TTTACCGCCA GTACTATGGT
GATGTTGCCC AAGTCGTCGC CGAAGACCCG CTGCGTGTGC TGTTCACCTT CAAGCACAAG
AACAACCGCG AGTTGCCGCT GATCCTCGGC CAGTTGCCCG TGCTACCCAA GCACTGGTAC
GAAGGCCGCG AATTCAACCG CGGCAACCTG GAAATCCCGC TCGGCAGCGG CCCGTACAAG
ATCACCGAGG TCAAGCCCGG CCGCTCGATC CGCTACGAGC GGGTCAAGGA CTACTGGGCC
AAGGACCTGC CGCTCAACCG CGGCCAGTTC AACTTCGACG CAATGACCTT CGACTCCTAC
CGCGACAACA CCGTCGCGCT GGAAGCACTC AAGGCCGGCC AATTCGATTA TGGCCTGGAA
ACCAGCGCGA AAAACTGGGC CACCGCCTAC AACGTTCCCG CCGTACGCGA TGGCCGCCTG
ATCAAGGAAG AGCTGCCCAA CGGCAACCCC ACAGGCATGC AGGGTTTCAT TTTCAACCTG
CGTAAACCGG TGTTTCAGGA CATCCGCGTA CGCCAGGCGC TGAGCCTGCT GCTGGACTTC
GAGTGGACCA ACAAGCAGTT GTTCAACGGC GCCTACACCC GCACCGGCAG CTATTTCGAA
AACTCCGAAA TGGCCGCCCA AGGCCTGCCC TCGCCTGACG AGCTGAAGAT CCTTGAGCCG
CTGCGCGGCA AGGTCCCCGA ACAGGTGTTC AGCGAGGCTT TCCACAACCC GCTCACCGAC
GGCAGCGGCA TGATCCGCGA ACAGCAGCGC CAGGCCTACA AGCTGCTGAT GGACGCTGGC
TGGAAGATCG TCGACGACAA GATGGTCGAC AAGAACGGCA AACCGGTGTC CATCGAGTTT
CTGCTGGCCC AGACCGAATT CGAGCGCATC CTGCTGCCGT TCAAACGCAA CCTGGCCGAC
CTTGGCATCG ACCTGAACAT CCGCCGCGTT GACGTTTCCC AGTACATCAC CCGCCTGCGC
TCGCGTGACT TCGACATGAT CGTCAGTGGC TATCCGCAGT CCAGCTCCCC AGGCAACGAG
CAGCGCGAGT TCTGGTCCAG TGCCGCTGCC GACAACCCCG GCAGCCGCAA CTTCATGGGC
CTGCGCGACC CGGCGATCGA TCAACTGGTC GAAGCACTGA TCAACGCCGA TTCCCGGCAA
AGCCTGATCA ACCACTCCCG CGCCCTGGAC CGCGTGTTGC TGTGGGGCTA CTACGTAATC
CCCAACTGGC ACATCAAGAC TTGGCGCGTG GCTTACTGGA ACCACATCGG CCACCCCGAT
GTTTCGCCCA AGTACGACAT CGGCATCGAC ACCTGGTGGA TCAAGCCAGA CGTGACGCCA
GCCGTGTCTG AAACGCCCGC GCAAGAGGCC AACTGA
 
Protein sequence
MMPTYRLRQL AGSLLLACLS LPAMAAPQHA LTLYDEAPKY PADFKHFDYV NPDAPKGGTF 
RQSSFGGFDS LNPFINKGVA AENVSAIYDT LMRQSLDEPF TEYGLVAGKI EKAPDNSWVR
FYLRPEARFH DGHPMRAEDV VFTFNALIKD GAPLYRQYYG DVAQVVAEDP LRVLFTFKHK
NNRELPLILG QLPVLPKHWY EGREFNRGNL EIPLGSGPYK ITEVKPGRSI RYERVKDYWA
KDLPLNRGQF NFDAMTFDSY RDNTVALEAL KAGQFDYGLE TSAKNWATAY NVPAVRDGRL
IKEELPNGNP TGMQGFIFNL RKPVFQDIRV RQALSLLLDF EWTNKQLFNG AYTRTGSYFE
NSEMAAQGLP SPDELKILEP LRGKVPEQVF SEAFHNPLTD GSGMIREQQR QAYKLLMDAG
WKIVDDKMVD KNGKPVSIEF LLAQTEFERI LLPFKRNLAD LGIDLNIRRV DVSQYITRLR
SRDFDMIVSG YPQSSSPGNE QREFWSSAAA DNPGSRNFMG LRDPAIDQLV EALINADSRQ
SLINHSRALD RVLLWGYYVI PNWHIKTWRV AYWNHIGHPD VSPKYDIGID TWWIKPDVTP
AVSETPAQEA N