| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3460 |
|---|
| Symbol | |
|---|
| ID | 6112418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 3809844 |
|---|
| End bp | 3810707 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641623247 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001750312 |
|---|
| Protein GI | 170722624 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR03339] aminoethylphosphonate catabolism associated LysR family transcriptional regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.143807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.568663 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGT TCCAGCTTCG CGCTTTCGAC GCCGTCGCCC GTGAGGGCAG TTTCACCCGT
GCTGCTGCGC GCTTGTTCAT TAGCCAGCCG GCGGTGACCG GGCACGTCAA GGCGTTGGAA
GAGCACTACC AGATCACCCT GTTACGGCGC ACGGCACGGC GGGTGGAGCT GACCGAGGAG
GGTACCCGCC TTGCGGCTAT CACCCGGGCG ATGTTCGGCC TGGCCGAAGA GGCACAGGCG
ATGCTCGAGG CCAATCGCCA ATTGCTCACC GGCCGCTTGG AGGTGGCCGC AGATGGGCCG
CACCGGGTCA TGCCGATGCT GGCGCTATTG CGTGAACGCT ACCCGGGCAT CACCGTCAAC
CTGCGCCTGG GCAATGCCCA GGAGACCTTG GCCGCATTGT TGTCAGAGCA TGCCGACGTG
GCCGTATTGA CCGAGATCGA ACCGCGCAAG GGCCTTTACT TGCAAAACCT CTGCGAGTCG
CGTTTGTGCG CACTGCTGCC GGCAGGCCAT GCCTGGGCTA GCGGGCAGGG TGACCTGCCA
CTGGCTGCTC TGCATGAACA GATCATGGTA CTGCGCGAAC CCAGTTCGAC CACCCGGCGA
ACCTTCGACA AGGCGTGTGA CCAAGCGTCG GTAAGGCCCA GGGTGTTGCT GGAGCTGGAC
AGCCGTGAGG CAGTCACCGA GGCAGTGGCG TCGGAGCTTG GGATTGGTGT GGTCTCCTCG
ACCGAGGTGG CCAATGACCC ACGAGTGGTG GCGCGGCCGC TGGTCGGCCA CGGTTTGCGT
AACCAGCATC TGGTGGGATG CCTGGAGCGG CGCCGCGAGC TGCGGCTGAT CCAGGCGTTC
CTGGCCTTGG CTGCCAGTCT GTAA
|
|---|
| Protein sequence | MNLFQLRAFD AVAREGSFTR AAARLFISQP AVTGHVKALE EHYQITLLRR TARRVELTEE
GTRLAAITRA MFGLAEEAQA MLEANRQLLT GRLEVAADGP HRVMPMLALL RERYPGITVN
LRLGNAQETL AALLSEHADV AVLTEIEPRK GLYLQNLCES RLCALLPAGH AWASGQGDLP
LAALHEQIMV LREPSSTTRR TFDKACDQAS VRPRVLLELD SREAVTEAVA SELGIGVVSS
TEVANDPRVV ARPLVGHGLR NQHLVGCLER RRELRLIQAF LALAASL
|
|---|
| |