| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3390 |
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| Symbol | |
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| ID | 6112342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 3734588 |
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| End bp | 3736345 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641623172 |
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| Product | OPT family oligopeptide transporter |
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| Protein accession | YP_001750243 |
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| Protein GI | 170722555 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1297] Predicted membrane protein |
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| TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily
[TIGR00733] putative oligopeptide transporter, OPT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.261384 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.385858 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACATG CTCCAGCCGC CGCCCTACCA AGGGTTCGCA TCGAACGTGA GCTGAGCCTG
CGGGCTGTGC TCACCGGCGC GGTGCTGGGC ATTTTGCTCA CGCCTTCGAA TGTCTATGCC
GGGCTCAGGA TCGGCTGGTC ATTCAACATG TCGATCATCG CTTTGCTGGT CGGCTTCGCC
CTGTGGCAGG GTATCGCGGG CCGCAAGAAG GAGCGGCCCG TTTGGACGTT GCACGAAAGC
AACATCAACC AGACTGTGGC GTCGGCCGCC GCTTCCATCA TTTCCGGCGG GCTGGTGGCG
CCGATCCCGG CCTATACGCT GCTCACCGGC CACCAACTGG ACCCGCTGCC GATGATGGCC
TGGGTTTTCT CGGTAAGCTT CCTGGGCATC TGGATCGCCT GGTATCTGCG CCCCGCCTTG
CTCAACGACC ATGACCTGAA GTTCCCCGAA GGCATGGCGA CCCTGGAAAC GCTGCAGCAG
ATTTACCATC ATGGGCGCGA AGCCATGTCT CGCATCAAGG TTCTCTGCGG TGCCGCGCTG
CTGTCAGGGC TGGTGAAGTG GATTGACGGC TTCGTCTGGG CGATACCACG CTGGGCACCC
ACGCCTGCGC TCGAGCGCCT GACCTTTACT GTCGATCCTT CGCTGTTGCT CATCGGTTTT
GGCGGCATCA TCGGCATTCG AGTTGGCCTG ACGTTGCTGT TCGGCGCCGC ACTGGCTTGG
GGCGGGCTAG CGCCGTGGCT GATCGACCAC ACATTGGTAG TGATCGACCC GAACGCCAGC
GGCCCCCAGT TCGCGGCGCT GGTGGAGTGG CTGTTGTGGC CGGGCGTAAG CCTGATGGTC
TGTGCGACCC TGACTTCATT GGCAGTTCGT CTGTTCCGAG TGTCACGGCG GTTGCCTGCA
AATGCGCTTG CACACCGGGC GCCGCGCGCC AGAATACGCT TGTCGCCAGG GCCTGCATCC
GGCCTGCTGC TATCCGTCGC TCTGGTCGTC GCCCTGCAGG CGCTGCTGTT CGGGATCGAC
TGGTGGATGG CGTTGTTGAG CATTCCTTTG GCGATTTGCC TTGCCGTCGT CGCCGCGCGC
GTCGCGGGGG CCACCGGCAT CGCACCGATT GGCGCCATTG GCAAACTGTC GCAGCTCGGC
TTCGGCTTGA TCGCCCCCGG CCAGGTGGCC ATCAACCTGA TGAGCGCCAA CACGGCGGGG
GGCGCGGCCG GACAATCCAC TGACCTGATG AACGACTTCA AGGTTGGCTT GGCGATCGGC
GCGACCCCGC ACAAGCAACT CGTTGCCCAA TGCATCGGTA TTTTCATCGG CAGCGTGGTC
GGCGTGCTGG TTTACCTGAT GCTGATACCG GATCCGCAGG CCATGCTGCT TACCGAGCAG
TGGCCTGCCC CGGCTGTCGC GACCTGGAAA GCGGTGGCCC AGACGCTGAC AGTTGGGCTG
GGAGCGCTGT CGCCCGAGAT TCGCTGGGCG ATTTTGGTCG GCAGCGTTAT AGGCGTGCTG
TTGGGCACGC TGGACAGCCT GCTACCGCAA CGGGCGGCCC GCTGGCTGCC GAGTACCGCC
GCACTGGGGC TGGCATTCAT ATTGCCGGCG TCGATCGCGA TGATGATGGG TTTTGGCGCA
GTGCTCACAT GGCTGGTCAA CTGCCGGTGG CCGAGCGTCA CGGAGCGCTT TGCGATCACA
GCGGCAGCTG GGTTGATTGC CGGTGAAAGC ATCACGGGCG TAGGGGCATC GTTCTGGGAG
ATGCTACGGA CGCTGTAG
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| Protein sequence | MGHAPAAALP RVRIERELSL RAVLTGAVLG ILLTPSNVYA GLRIGWSFNM SIIALLVGFA
LWQGIAGRKK ERPVWTLHES NINQTVASAA ASIISGGLVA PIPAYTLLTG HQLDPLPMMA
WVFSVSFLGI WIAWYLRPAL LNDHDLKFPE GMATLETLQQ IYHHGREAMS RIKVLCGAAL
LSGLVKWIDG FVWAIPRWAP TPALERLTFT VDPSLLLIGF GGIIGIRVGL TLLFGAALAW
GGLAPWLIDH TLVVIDPNAS GPQFAALVEW LLWPGVSLMV CATLTSLAVR LFRVSRRLPA
NALAHRAPRA RIRLSPGPAS GLLLSVALVV ALQALLFGID WWMALLSIPL AICLAVVAAR
VAGATGIAPI GAIGKLSQLG FGLIAPGQVA INLMSANTAG GAAGQSTDLM NDFKVGLAIG
ATPHKQLVAQ CIGIFIGSVV GVLVYLMLIP DPQAMLLTEQ WPAPAVATWK AVAQTLTVGL
GALSPEIRWA ILVGSVIGVL LGTLDSLLPQ RAARWLPSTA ALGLAFILPA SIAMMMGFGA
VLTWLVNCRW PSVTERFAIT AAAGLIAGES ITGVGASFWE MLRTL
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