Gene PputW619_3319 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_3319 
Symbol 
ID6112270 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp3659346 
End bp3661019 
Gene Length1674 bp 
Protein Length557 aa 
Translation table11 
GC content65% 
IMG OID641623101 
ProductL-serine ammonia-lyase 
Protein accessionYP_001750173 
Protein GI170722485 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1760] L-serine deaminase 
TIGRFAM ID[TIGR00719] L-serine dehydratase, iron-sulfur-dependent, beta subunit 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGCTA TGTACTCATT CTGCCGCAAC CTTCCCCCCT ATGATTTTTC AACGGGCAAG 
CCTGAGCCCG GCCATAACTC CAAGACCGCA CCCGTGGAAG CGTTCATGAC CCAAGACATC
AGCCTGCTCA ATACCGTCAT CGGCCCCGTG ATGCGTGGCC CCTCCAGCTC TCATTCTGCC
GCACCCTACA TGATCGGCCG AACCGTGCGG GAACTGGCGC TCGGCCCTGG GGAGCGGTTG
AAATCGGTGG TCATCCGTTT CGACCCTTCT GGCTCGTTCG CCGAGGTATA CAGCAACCAG
GGCAGCGATG AAGGCTTTGC GGCCGGGCTG GCGGGCGTGG CGATCACCTC CGAAGCGTAC
AGGCAGGCCT TGCAACGCGC TTGCCGAGGG GAAGACTTCG AGTTCGCTAT CCGCATCGGG
CCGCTGGATC GTAACGACCA TCCGAACCGG GTCGATCTGC ATGTATGCGT CACTGGCATC
CATGCCCAGG AACGCACCGA TGTGTTCGAG GGCGTGTCGC TCGGCGGCGG CACATTTCTG
GTTACCCACC TCAATGGCCA GCACATCAAT GTGGACGGCG CCGCGTACAC GTTGATTGCC
GAACACGAAG TTGCGGCAAC AGGCGACCTG TTGCCCTACC TTGAAGGCGC GCAGGTTGCG
GAGCAACACG CGCTCAATGG CATGACGCTC TACGCCCTCA CCGTCGCGCC ATCGGTCCGG
ATGCTCGCCG ACCTGCGCGG GCTGGCTGGC CTGCGCAGGG TGCGCCTGGC CAGCCCCACC
CAGGAAGTGG TGCACAACCG CGAACGTACC CTGCTGGGCG CCAGCGAACT GCTGCAACGT
GTAGCTGCGG ACGCCGACTT GGCCGATTTT GCGATGGCTT ACGAATGCGC CCGGCTCGGG
CTGGACCTGG CAGCCGTCCA GCAGCGCTTC GATGAACGCG TGCAGTTGAT GGCCGCCTCG
GTGGAGGCCG GTCTGGCTAA GGAAGACAGC GCCGGCATGA AGTACCTGCG CCCTACGGCC
CGTCGGTTTT CCCATACCCC GCTGCCGGAG CCACTGGAAA CCAGCTTCCT CAAGACAGCT
ATCGCCGGCG CATTGGCCGC CATGGAAGAA ACCACCAGCC GCGGCGTGGT GTGCGCGGCG
CCCACGGCAG GCAGCGCCGG CATCGTGCCC GGTTGCCTGC ACGCACTGCG TGTACTCGGC
GCCAGCGAGC ATGCCTTGAG CGACAGCCTG AAAGTGATGG CGCTGATTGG CGCACTGTTC
GCGGTGCGTG GCTCATACGC CGCAGAAACG GGCGGCTGCT CGGTGGAAAC CGGCACCTCG
GCAGCCATGG CGGCGGCCGG CATCACTCAC TACTTCGGCG GTACGCCGGC GCAGATCCTC
GCCGCCGCGT CCATCTGCCT GATGAACACC TTGGGCCTGA TCTGCGACCC GGTGGGTGGC
GAAGTGGAGA TCCCCTGTCA CGCCCGCAAC ATCGCCGGCG TAGGCCATGC GTGGAGCGCC
AGTACTGCGG CACTGGGCGG TTTCGATGCA GTCATTCCCT TCGATGAACT GGTCGAGCAG
ACCGTGAAGG TAGGCAACAT GATGCACCCC GATTTGCGCT GCACGGCGCG CGGCGGTTGC
GCGACCACGC CCTCAGCGCT GCGCCTGGTC GCTGTCAAGA ACCTGGGAGC CTGA
 
Protein sequence
MSAMYSFCRN LPPYDFSTGK PEPGHNSKTA PVEAFMTQDI SLLNTVIGPV MRGPSSSHSA 
APYMIGRTVR ELALGPGERL KSVVIRFDPS GSFAEVYSNQ GSDEGFAAGL AGVAITSEAY
RQALQRACRG EDFEFAIRIG PLDRNDHPNR VDLHVCVTGI HAQERTDVFE GVSLGGGTFL
VTHLNGQHIN VDGAAYTLIA EHEVAATGDL LPYLEGAQVA EQHALNGMTL YALTVAPSVR
MLADLRGLAG LRRVRLASPT QEVVHNRERT LLGASELLQR VAADADLADF AMAYECARLG
LDLAAVQQRF DERVQLMAAS VEAGLAKEDS AGMKYLRPTA RRFSHTPLPE PLETSFLKTA
IAGALAAMEE TTSRGVVCAA PTAGSAGIVP GCLHALRVLG ASEHALSDSL KVMALIGALF
AVRGSYAAET GGCSVETGTS AAMAAAGITH YFGGTPAQIL AAASICLMNT LGLICDPVGG
EVEIPCHARN IAGVGHAWSA STAALGGFDA VIPFDELVEQ TVKVGNMMHP DLRCTARGGC
ATTPSALRLV AVKNLGA