| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3318 |
|---|
| Symbol | |
|---|
| ID | 6112269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 3658267 |
|---|
| End bp | 3659304 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641623100 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001750172 |
|---|
| Protein GI | 170722484 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCC CCAAGGTGAA TTTCCCCTCT CCGGTGGACG ATCATCTGCC GAGCGTGAGC
GTGCCTGGCC TGTCGGTGGG GTTTGTGCTG TTGCCGGGTT TTACCCTGAT GGCGTTTTCC
GGCTTCGTCG AGGTATTGCG GCACGCGGCC GACAAAGGCG ACAAAAGTGA TCAGGTACTG
TGCCGCTGGA GGCTGATGGC TGCCGACCGG TCGATGCTCA AGGCCAGTTG CGGGCTGGAG
GTACGGCCGG AGGCCGCGCT GGAGGACCCA GCGCAGTTCG ACTACATCGT GGTAGTGGGC
GGGCGAGTGC CGCGGCCTCT GGACTATGAT CGCCGGGTGC TGGAGTACTT GCGCGCAGCC
CAGGCGAGCG GAGCGGTGCT GGTGGGGGCC TGCACCGGTT CCTTTGCATT GGCAAAGGCG
GGGTTGATGG ACGCCGTGCA CACCAGCGTT CACTGGTATC ACTACAGCGA ATTCCAGGAG
TACTTCCCCT GCTCGATCCC CGTGACCGAT GAGATATTCA TCGTCGACAA AGGCATCATC
ACCTGCGCGG GTGGCACATC GACAATGGAT CTGGCTCTTT ATCTGGTCAG CCGGCATTGC
GGCGTTGACC GCGCGACGAA GAGCCTGAGG CACCTGATCT CGGACCAGAT GCGCGGGGCC
AACCATCCGC AGATCCCCTT GCTGCATTCG GACTCGAAGG CCTTTGCGCT AGACGGTAAG
GTGCGCAGGG CAGTGTTCCT GATGCATCAA CATATCCGTG CGCCACTGTC GATTGCGGAA
ATTGCCGAGA AAGCGAACAT CGGTGAGCGG CAACTATCGC GTCTGTTCAC CAAGCACCTT
GGAGTGACAC CTTCGGAATA TTACCGGCGA GTCAGGCTGG AGCAGGGATG CTGGTTGCTG
GAAAGCACGG CGAACCCGGT GACGCAGGTG GCGTATGAGA CCGGGTTTAC TGACTTGTCA
CATTTCAATC GGCAGTTCTC TCAAGCGTAT GGGATGCTGC CCTCGCAGTG GCGGGACCAG
GTGCGTGCTC CGTTGTAG
|
|---|
| Protein sequence | MDTPKVNFPS PVDDHLPSVS VPGLSVGFVL LPGFTLMAFS GFVEVLRHAA DKGDKSDQVL
CRWRLMAADR SMLKASCGLE VRPEAALEDP AQFDYIVVVG GRVPRPLDYD RRVLEYLRAA
QASGAVLVGA CTGSFALAKA GLMDAVHTSV HWYHYSEFQE YFPCSIPVTD EIFIVDKGII
TCAGGTSTMD LALYLVSRHC GVDRATKSLR HLISDQMRGA NHPQIPLLHS DSKAFALDGK
VRRAVFLMHQ HIRAPLSIAE IAEKANIGER QLSRLFTKHL GVTPSEYYRR VRLEQGCWLL
ESTANPVTQV AYETGFTDLS HFNRQFSQAY GMLPSQWRDQ VRAPL
|
|---|
| |