| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3052 |
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| Symbol | |
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| ID | 6112002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 3389139 |
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| End bp | 3390422 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641622837 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001749911 |
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| Protein GI | 170722223 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.669713 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGTTA TCTGCCTGTT CCTGTTGTTG TTCGTGTTCA TGTTCCTGGG AGTGCCGATC
GCGATTTCGC TGGGCTTGTC GGGCGCACTT TCAATCCTGA TGTTCAGCCA GGACTCTCTC
AGCTCGCTGG CGATCAAGCT GTTCGAGACC TCCGACAGTT ACACCTTCCT GGCCATCCCG
TTCTTCCTGC TGTCGGGCGC GTTCATGACC ACCGGTGGCG TGGCCCAGCG GCTGATCGAC
TTCGCCAACG CCTGCGTCGG GCACATCCGT GGCGGCCTGG CCATTGCCGC AGTGCTGGCA
TGCATGCTGT TCGCGGCGTT GTCGGGCTCG TCGCCGGCCA CGGTCGCGGC GGTGGGTTCG
ATTGCCGTTG CCGGCATGGT GCGCTCCGGT TATCCCCGCG AGTTCGGCGC GGGGATCATC
TGCAACGCCG GCACCCTGGG CATCCTGATT CCGCCATCGA TCGTCATGGT GGTGTACTCG
GCGGCGACCG AGACCTCGGT AGGCAAGCTG TTCATGGCCG GTGTGGTGCC AGGCATCCTG
CTGGGCCTGG CGCTGATGGT AACGATCTAT ATCGTCGCCC GGATCAAGAA ACTGCCCGCA
CAACCTCGTG CCAGTTTTGC CGAATGGTTG AGCACCGCCA GGCGCGCGTT CTGGGGGCTG
TTGCTGTTGG TGATCATCCT GGGCGGCATC TACAGCGGCA TGTTCACCCC CACCGAGGCG
GCCGCCGTGG CAGCGGTGTA CTCAGCGTTC ATCGCGCTGT TCGTGTACAA GGACATGCGC
CTGCGCGACT GCCCGAAGGT ATTGCTGGAG TCGGGCCGGC TGACCATCAT GCTGCTGTTC
ATCATCGCCA ACGCCATGTT GTTCGCCCAT GTGCTGACCA CCGAGCAGAT CCCCCAGCAG
ATCACCCAGT GGGTGCTGTC CGAGGGCCTG ACGCCGATCG GTTTCCTGAT CATGGTCAAC
GTGGTACTGC TGGTGGCGGG CAGCTTCATG GAGCCGTCGG CGATCATCCT GATTCTCGCG
CCGATCTTCT TCCCGATCGC CATGAAGCTT GGGATCGACC CGATTCATCT GGGGATCGTC
ATGGTGGTGA ACATGGAGAT CGGCCTGGTG CATCCACCGG TGGGGCTGAA CCTGTTCGTG
ACTTCAGCGG TGACGGGCCT GACGCTGGGG CAGACGATTC GCGCCGCGCT GCCGTGGCTG
TCGATCCTGC TGCTGTTCCT GGTGCTGGTG ACTTACGTGC CGTTCATTTC GCTGGCACTG
CCGCAGTGGT TGGGCATGCC GTAA
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| Protein sequence | MTVICLFLLL FVFMFLGVPI AISLGLSGAL SILMFSQDSL SSLAIKLFET SDSYTFLAIP
FFLLSGAFMT TGGVAQRLID FANACVGHIR GGLAIAAVLA CMLFAALSGS SPATVAAVGS
IAVAGMVRSG YPREFGAGII CNAGTLGILI PPSIVMVVYS AATETSVGKL FMAGVVPGIL
LGLALMVTIY IVARIKKLPA QPRASFAEWL STARRAFWGL LLLVIILGGI YSGMFTPTEA
AAVAAVYSAF IALFVYKDMR LRDCPKVLLE SGRLTIMLLF IIANAMLFAH VLTTEQIPQQ
ITQWVLSEGL TPIGFLIMVN VVLLVAGSFM EPSAIILILA PIFFPIAMKL GIDPIHLGIV
MVVNMEIGLV HPPVGLNLFV TSAVTGLTLG QTIRAALPWL SILLLFLVLV TYVPFISLAL
PQWLGMP
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