| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3050 |
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| Symbol | |
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| ID | 6112000 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 3387440 |
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| End bp | 3388438 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641622835 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001749909 |
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| Protein GI | 170722221 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0275975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAGC TGACCCAGGC GCTGTTTTGC GCCGCCGCAG TGTCCATGGC CGGCCTTGCA
CAGGCTGCCG ACCCGATCAT CATCAAGTTC GCCCACGTCG TGGCCGACAG CACGCCCAAA
GGCCAGGGTG CGCTGATGTT CCAGAAGCTG GTGGCGGCGG ACCCGCAGCT CAAGGACAAG
GTCAAGGTCG AGGTCTACCC CAATTCGTCA CTGTTCGGCG ACGGCAAGGA GATGGAAGCG
TTGCTGCTGG GGGATGTGCA GATGCTGGCG CCTTCGCTGG CCAAGTTCGA GCACTACAAC
AAGCAGGTGC AAATCTTCGA CCTGCCGTTC CTGTTCGACG ACCTGGCGGC CGTCGACCGC
TTCCAGCAAG GCCCGCAGGG CAAGGCACTG CTGACGTCGA TGGACGACAA AGGCATCCAC
GGCCTGGCCT ACTGGCACAA CGGCCTCAAG CAGCTGTCGG CCAACAAGAA AGTGATCCTG
CCCAAAGATG CCCGCGGCCT GAAATTCCGC GTGCAAGCCT CCAGCGTGCT CGAAGAGCAG
TTCAAGGCGA TCCGCGCCAA CCCGCGCAAG ATGAGCTTTG CCGAGGTTTA TCAGGGCCTG
CAGACCGGCA CGGTCAATGG CACCGAAAAC ACCTGGTCGA ACTATGAAAG CCAGAAGGTC
AACGAAGTGC AGCCGTTCTT CACCGAGACC AACCACGGCC TGATCGACTA CATGGTGATC
ACCAACGCCA AGTTCTGGAA CGGCCTGCCT GAGGACGTGC GTGGCGAGCT GCAAACGCTC
ATGGACCAGG TCACCGTCGA GGTGAACAAA CAGGCCGAAG CCCTGAACCA GACCTCCAGG
CAGAAAATCA TCGATGCCAA GACCAGCGAG ATCGATGCCC TGACTGCCGA GCAGCGCCAG
CAATGGCGTG AGGCCATGCG CCCGGTGTGG GACAAGTTCT CCGGTCAGAT CGGCGCTGAC
TTGATCAAGG CAGCCGAGGC CGCCAACAAG GCTTCCTGA
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| Protein sequence | MFKLTQALFC AAAVSMAGLA QAADPIIIKF AHVVADSTPK GQGALMFQKL VAADPQLKDK
VKVEVYPNSS LFGDGKEMEA LLLGDVQMLA PSLAKFEHYN KQVQIFDLPF LFDDLAAVDR
FQQGPQGKAL LTSMDDKGIH GLAYWHNGLK QLSANKKVIL PKDARGLKFR VQASSVLEEQ
FKAIRANPRK MSFAEVYQGL QTGTVNGTEN TWSNYESQKV NEVQPFFTET NHGLIDYMVI
TNAKFWNGLP EDVRGELQTL MDQVTVEVNK QAEALNQTSR QKIIDAKTSE IDALTAEQRQ
QWREAMRPVW DKFSGQIGAD LIKAAEAANK AS
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