Gene PputW619_3010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_3010 
Symbol 
ID6111961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp3351647 
End bp3352780 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content63% 
IMG OID641622797 
Productdiguanylate cyclase 
Protein accessionYP_001749871 
Protein GI170722183 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0798808 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAGC TCAATCCTGG CGATGAAATA GCGCACTGTG TAAGGAGGGA TCGCCTGCAG 
CAGCTGTTCG TCCAGTCGGC GCCCGCTGTG CTTGGCAGCT TCCTGGCTGC GGCAATGTTG
TGCTGGTTGG GCTGGGAGCG TTTCGACCAG CAGAACGTGG CCGCCTGGAT GACGGTATTG
AGCCTGTCGA CGGTCCTGCG TACTTCCATG TTCGTCGCCT ATCTGCGGGC ACCGGCCAAC
CTGCGCACGG CCGAACGGTG GGAGTGGCGT TACTGGGCCA CCCTGGTGCT GTCGGCAGCA
GTCTGGGGCT TGGGCGCATT GGCTGTAATG CCTGCCGATG ACCTGCTGGG GCAGACCTTG
ATCATGCTGT TCGCCGTGGG CATGTCGGTC AGTGCAGTCT CGTGTTACTC CTCGTACCGC
AACATGACCC TGGTCTCGAT CGCCCTGGTG CTGCTGCCCT GTACCGCCTG GCTGCTGCTG
CAGCCGTCCG CGCTTCAGCA GGGCATCGCT CTGGCGGTGC TGGTGTTCGC CTCGTTCGTC
GTCAACGCGA CGCAAAGCCT GTCTTCAGCG CTGGTGACCG CCTGGCGCCT GAAGCACGAA
ATGGAACGTG CACACCGGCT TGCCATCGTG GCCTCGTGCA CGGACGAACT GACCGGACTG
AACAATCGCC GTGCCTTTTT TGACTGTGCC TTGGCGCAGC ACACCTTGTG CAAGGAGGGG
CACACGTATG TAGCCGTGCT GATGCTGGAC GTCGATCATT TCAAACAGAT CAACGATACC
GCCGGGCATG CGGCGGGCGA CCAGGTGCTG AAGCGGATCG GTACAGCCAT CAGCGCCAGC
CTGCGTGACA ACGACATCGC CGGCAGGCTG GGCGGCGAGG AGTTCGCCAT CCTGCTGCCC
GATACGCCTC TGGTCACTGC CAGCGAGTTT GCCGAGCGCC TGCGGGCCCT GATAGCAAAG
CTGAACGTCG ACACGCAGTA CGCGGTTACC GCCAGCATAG GCCTGGCCTT CGCCAAAGCA
CCCGCAAGTG AACTCGATGC GTTGCTCAGC AGCGCCGACA AGGCCATGTA CCGTGCCAAG
GCATCGGGTC GTAATCGGGT GACGATCGTC GACCATGTGC ATGCCGCCGC CTGA
 
Protein sequence
MTELNPGDEI AHCVRRDRLQ QLFVQSAPAV LGSFLAAAML CWLGWERFDQ QNVAAWMTVL 
SLSTVLRTSM FVAYLRAPAN LRTAERWEWR YWATLVLSAA VWGLGALAVM PADDLLGQTL
IMLFAVGMSV SAVSCYSSYR NMTLVSIALV LLPCTAWLLL QPSALQQGIA LAVLVFASFV
VNATQSLSSA LVTAWRLKHE MERAHRLAIV ASCTDELTGL NNRRAFFDCA LAQHTLCKEG
HTYVAVLMLD VDHFKQINDT AGHAAGDQVL KRIGTAISAS LRDNDIAGRL GGEEFAILLP
DTPLVTASEF AERLRALIAK LNVDTQYAVT ASIGLAFAKA PASELDALLS SADKAMYRAK
ASGRNRVTIV DHVHAAA