Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_3010 |
Symbol | |
ID | 6111961 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 3351647 |
End bp | 3352780 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641622797 |
Product | diguanylate cyclase |
Protein accession | YP_001749871 |
Protein GI | 170722183 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0798808 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGAGC TCAATCCTGG CGATGAAATA GCGCACTGTG TAAGGAGGGA TCGCCTGCAG CAGCTGTTCG TCCAGTCGGC GCCCGCTGTG CTTGGCAGCT TCCTGGCTGC GGCAATGTTG TGCTGGTTGG GCTGGGAGCG TTTCGACCAG CAGAACGTGG CCGCCTGGAT GACGGTATTG AGCCTGTCGA CGGTCCTGCG TACTTCCATG TTCGTCGCCT ATCTGCGGGC ACCGGCCAAC CTGCGCACGG CCGAACGGTG GGAGTGGCGT TACTGGGCCA CCCTGGTGCT GTCGGCAGCA GTCTGGGGCT TGGGCGCATT GGCTGTAATG CCTGCCGATG ACCTGCTGGG GCAGACCTTG ATCATGCTGT TCGCCGTGGG CATGTCGGTC AGTGCAGTCT CGTGTTACTC CTCGTACCGC AACATGACCC TGGTCTCGAT CGCCCTGGTG CTGCTGCCCT GTACCGCCTG GCTGCTGCTG CAGCCGTCCG CGCTTCAGCA GGGCATCGCT CTGGCGGTGC TGGTGTTCGC CTCGTTCGTC GTCAACGCGA CGCAAAGCCT GTCTTCAGCG CTGGTGACCG CCTGGCGCCT GAAGCACGAA ATGGAACGTG CACACCGGCT TGCCATCGTG GCCTCGTGCA CGGACGAACT GACCGGACTG AACAATCGCC GTGCCTTTTT TGACTGTGCC TTGGCGCAGC ACACCTTGTG CAAGGAGGGG CACACGTATG TAGCCGTGCT GATGCTGGAC GTCGATCATT TCAAACAGAT CAACGATACC GCCGGGCATG CGGCGGGCGA CCAGGTGCTG AAGCGGATCG GTACAGCCAT CAGCGCCAGC CTGCGTGACA ACGACATCGC CGGCAGGCTG GGCGGCGAGG AGTTCGCCAT CCTGCTGCCC GATACGCCTC TGGTCACTGC CAGCGAGTTT GCCGAGCGCC TGCGGGCCCT GATAGCAAAG CTGAACGTCG ACACGCAGTA CGCGGTTACC GCCAGCATAG GCCTGGCCTT CGCCAAAGCA CCCGCAAGTG AACTCGATGC GTTGCTCAGC AGCGCCGACA AGGCCATGTA CCGTGCCAAG GCATCGGGTC GTAATCGGGT GACGATCGTC GACCATGTGC ATGCCGCCGC CTGA
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Protein sequence | MTELNPGDEI AHCVRRDRLQ QLFVQSAPAV LGSFLAAAML CWLGWERFDQ QNVAAWMTVL SLSTVLRTSM FVAYLRAPAN LRTAERWEWR YWATLVLSAA VWGLGALAVM PADDLLGQTL IMLFAVGMSV SAVSCYSSYR NMTLVSIALV LLPCTAWLLL QPSALQQGIA LAVLVFASFV VNATQSLSSA LVTAWRLKHE MERAHRLAIV ASCTDELTGL NNRRAFFDCA LAQHTLCKEG HTYVAVLMLD VDHFKQINDT AGHAAGDQVL KRIGTAISAS LRDNDIAGRL GGEEFAILLP DTPLVTASEF AERLRALIAK LNVDTQYAVT ASIGLAFAKA PASELDALLS SADKAMYRAK ASGRNRVTIV DHVHAAA
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