| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3007 |
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| Symbol | nikC |
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| ID | 6111958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 3349111 |
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| End bp | 3349956 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641622794 |
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| Product | nickel transporter permease NikC |
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| Protein accession | YP_001749868 |
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| Protein GI | 170722180 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | [TIGR02790] nickel ABC transporter, permease subunit NikC |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0763396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.524853 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGTGC AGTCTGCCCT GCGTCAACCA TTGCTGCTGC GCCGCCCCAG CCTGATGATC
GGCCTGGCCC TGGTCGGGCT GCTCGCATTG CTGGCGCTGT TCGGCCACTG GATCGCCCCG
CATGACCCCG ACCTGGTCGA CCTCGGCCAG CGCCTGCAGG CGCCCGACGC CAGCCACTGG
CTGGGCACCG ACCACCTCGG GCGCGACCTG CTTTCGCGGC TGATCGTCGG CACGCGCCTG
TCCTTGGGCA GCGTGATGCT GACCCTGGCG CTGGTGCTGG CGCTAGGGCT CGCGGTAGGC
GGCGTGGCCG GGTTCGTCGG CGGGCGCACC GACCTGCTGC TGATGCGCCT GTGCGACATG
TTCATGACCT TCCCCACGCT GGTCCTGGCA TTCTTCTTCG TCACCTTGCT GGGCACCGGC
CTTAGCAACG TGATCATCGC CATCGCCCTG TCCCACTGGG CCTGGTATGC GCGCATGGTG
CGCGGCCTGG TGATTGCCCA GCGCGGCCGC GAATACGTGT TGGCTTCACG CCTGGCCGGT
GCTTCACGCT GGGCGCGGCT GCGCCAGCAT GTGCTGCCCA ATATCGCCGG CCCATTGCTG
GTGCTGGCGA CCATGGATAT CGGCCACATG ATGCTGCACG TCTCCGGCCT GTCGTTCCTT
GGCCTTGGGG TGGCGCCGCC CACCGCCGAA TGGGGCGTGA TGATCAACGA CGCCAAGGAA
TTCATCTGGA CGCACCCGCA ACTGCTGCTG TTGCCAGGGC TGATGATCTT CTTCTCGGTG
ATGGCCTTCA ACCTGCTGGG CGATGCGCTG CGCGACCGCC TCGACCCCAC ACAGGAGCGC
CATTGA
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| Protein sequence | MSVQSALRQP LLLRRPSLMI GLALVGLLAL LALFGHWIAP HDPDLVDLGQ RLQAPDASHW
LGTDHLGRDL LSRLIVGTRL SLGSVMLTLA LVLALGLAVG GVAGFVGGRT DLLLMRLCDM
FMTFPTLVLA FFFVTLLGTG LSNVIIAIAL SHWAWYARMV RGLVIAQRGR EYVLASRLAG
ASRWARLRQH VLPNIAGPLL VLATMDIGHM MLHVSGLSFL GLGVAPPTAE WGVMINDAKE
FIWTHPQLLL LPGLMIFFSV MAFNLLGDAL RDRLDPTQER H
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