| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2956 |
|---|
| Symbol | |
|---|
| ID | 6111907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 3282791 |
|---|
| End bp | 3285208 |
|---|
| Gene Length | 2418 bp |
|---|
| Protein Length | 805 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641622743 |
|---|
| Product | PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein |
|---|
| Protein accession | YP_001749817 |
|---|
| Protein GI | 170722129 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4993] Glucose dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0315407 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.148249 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAA CACCGCGCGC CTCTGGCGCC ACAAACATCA TCCTGGTCGG CTTGGGCGTG
ATCATCGCCC TGCTTGGCCT CCTCCTGGCT GCCGGCGGCG TCAAGCTCGC GGGCCTTGGC
GGCTCCTGGT ACTTCCTGAT CGGCGGCCTG GCCATGGCCA TCGCCGGCGT ACTCATTGCC
CGACGCAAGA AAGCCGGCGC CTGGCTCTAC GCTGCATTCC TGATCGGCAC CGCACTGTGG
GCACTGATCG ACGCCGGCCT GGTGTTCTGG CCGCTGTTCT CGCGCCTGTT CATGTTCGGT
GCCATCGGCA TGGTGGTGGC ACTCGTCTAT CCGCTGCTGG TACGCGCCAA TGGCGGTAGC
ACTGGCCGTG GTGCCTACGG CATCGCCGGC GTGCTGGCCG TGGTGCTGGT GATCGCTGTG
GGCAACATGT TCGTTGCTCA TCCAAGCGTC GCACCTACCG GCAAAGGCCC GGGCATGACC
CCGGTCGAAG CCGGCAAGGA GCAGAAGGAC TGGGCCCACT ATGGCAATAC CGAAGGTGGC
AGCCGCTTCG CTGCACTGGA CCAGATCAAC CGCGACAACG TCGACAAGCT CAAGGTCGCC
TGGACCTACC ACACCGGTGA CGTCGCCATC AGCGACGGCA ACGGTGCCGA AGACCAGCTG
ACCCCGTTGC AGGTCGGCAA CAAAGTGTTC ATCTGCACCC CGCACAACAA CCTGATCGCC
CTCGATGCCG ACACCGGCAA AGAGCTGTGG AAGAACGAGA TCAACGCCCA GTCCAAAGTC
TGGCAGCGTT GCCGTGGCAT GGCCTACTTC GACGCTACCG CACCAGTGGC TCAGCCAACT
CAGCCAAACA GCTCGCCGGT AACCGCCGGT AGCGTACCGG CTGGCGCCAA CTGCCAGCGT
CGCCTGCTGA CCAACACCAT CGACGGTCGA CTGATCGCGG TCGACGCCGA CACTGGTGAG
TTCTGCCAAG GCTTCGGCAA CAATGGCCAG GTCAACCTGA TGGCCGGCCT GGGTGACGTA
CCGAACTCCT ACTACCAGCT CTCCTCCGCG CCGCTGATGG CCGGTACCAC CGTGGTGGTA
GGCGGCCGTG TCGCCGACAA CGTCCAGACC GACATGCCAG GCGGCGTAAT CCGTGGCTTC
GACGTGTTCA CCGGTGCCAT GCGCTGGGCG TTCGACCCGG GCAACCCGCA AGACCGCAAC
GCTCCGGCTG ACGGCAGCAC CTATGTGCGC AGCACGCCGA ACAGCTGGGC GCCGATGTCC
TACGACCCGG CGATGAACAC CGTGTTCCTG CCGATGGGCT CCTCGTCCAC CGACATCTAC
GGTGTCGAGC GCAGCAAGCT GGACCACACC TACGGTGCTT CGGTGCTGGC CCTGGACGCC
ACCACCGGCA ACGAGAAGTG GGTGTTCCAG ACCGTGCACA ACGACCTGTG GGACTTTGAC
CTGCCGATGC AGCCAAGCCT GATCGATTTC ACCAAGGACG ACGGCGAGTC GGTACCTGCG
GTGGTGATCG GCACCAAGGC CGGGCAGATC TACGTGCTCG ACCGCGCTAC CGGCAAGCCG
CTTACCCAGG TTGACGAAGT TCCGGTCAAG CCAAGCAACA TCCCGAACGA GCCGTACTCC
CCGACCCAGC CCAAATCGGT GGGCATGCCG CAGATCGGCG CACAGACGCT GACCGAGTCG
GACATGTGGG GCGCCACGCC ATATGACCAG CTGCTGTGCC GTATCGACTT CAAGAAGATG
CGCTACGACG GCCTGTACAC CGCGCCGGGC ACCGACCTGT CGCTGAGCTT CCCCGGTTCG
CTGGGGGGCA TGAACTGGGG CAGCATTTCC ACCGACCCGG TCCATGGTTT CATCTTCGTC
AACGATATGC GCCTGGGCCT GTGGATCCAG ATGATCCCGT CGCAGAACAA AGGCCAGGCC
GCTGGCGGTG GTGAAGCACT GAACACCGGC ATGGGCGCCG TACCGCTCAA AGGCACCCCT
TATGCGGTGA ACAAGAACCG CTTCCTGTCG GTAGCCGGCA TCCCTTGCCA GGCGCCACCG
TTCGGCACCC TGACCGCGAT CGACATGAAG ACCCGCCAGG TGGCCTGGCA GGTACCGGTC
GGCACCGTTG AAGATACCGG CCCGCTTGGT ATCCGCATGC ACCTGCCGAT CAAGATCGGC
CTGCCAACCC TGGGTGGCAC CCTGTCGACC CAAGGCGGCC TGGTGTTCAT TGCCGGCACC
CAGGACTTCT ACCTGCGCGC CTACGACAGC AGCAACGGTA ACGAAATCTG GAAGGCCCGC
CTGCCAGTCG GCAGCCAGGG TGGCCCGATG ACCTATGTCT CGCCCAAGAC TGGCAAGCAG
TACGTGGTGG TCACTGCCGG CGGCGCCCGC CAGTCGACTG ACCGTGGCGA CTACGTGATT
TCTTACGCAC TGCCGTAA
|
|---|
| Protein sequence | MNETPRASGA TNIILVGLGV IIALLGLLLA AGGVKLAGLG GSWYFLIGGL AMAIAGVLIA
RRKKAGAWLY AAFLIGTALW ALIDAGLVFW PLFSRLFMFG AIGMVVALVY PLLVRANGGS
TGRGAYGIAG VLAVVLVIAV GNMFVAHPSV APTGKGPGMT PVEAGKEQKD WAHYGNTEGG
SRFAALDQIN RDNVDKLKVA WTYHTGDVAI SDGNGAEDQL TPLQVGNKVF ICTPHNNLIA
LDADTGKELW KNEINAQSKV WQRCRGMAYF DATAPVAQPT QPNSSPVTAG SVPAGANCQR
RLLTNTIDGR LIAVDADTGE FCQGFGNNGQ VNLMAGLGDV PNSYYQLSSA PLMAGTTVVV
GGRVADNVQT DMPGGVIRGF DVFTGAMRWA FDPGNPQDRN APADGSTYVR STPNSWAPMS
YDPAMNTVFL PMGSSSTDIY GVERSKLDHT YGASVLALDA TTGNEKWVFQ TVHNDLWDFD
LPMQPSLIDF TKDDGESVPA VVIGTKAGQI YVLDRATGKP LTQVDEVPVK PSNIPNEPYS
PTQPKSVGMP QIGAQTLTES DMWGATPYDQ LLCRIDFKKM RYDGLYTAPG TDLSLSFPGS
LGGMNWGSIS TDPVHGFIFV NDMRLGLWIQ MIPSQNKGQA AGGGEALNTG MGAVPLKGTP
YAVNKNRFLS VAGIPCQAPP FGTLTAIDMK TRQVAWQVPV GTVEDTGPLG IRMHLPIKIG
LPTLGGTLST QGGLVFIAGT QDFYLRAYDS SNGNEIWKAR LPVGSQGGPM TYVSPKTGKQ
YVVVTAGGAR QSTDRGDYVI SYALP
|
|---|
| |