| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2925 |
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| Symbol | |
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| ID | 6111876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 3237972 |
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| End bp | 3239573 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641622712 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001749786 |
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| Protein GI | 170722098 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0439369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.12147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCGT CCAATTCCCC ACTACCTGAT GAGCCGCCGC CCACCGGCCT GCTGCGCCGC
TCCCTTGGCA GCCTGATGCC GGTGGGTTTT GCCCTGGCCG GTATCGCCCT GTCGGTGCTG
CTGGGCCAAC TGGACGTGCA ACGCCAGCCT GACGGCCTGA TGGCCAGCCC GCTGGTCTCG
CCGCTGCTCT GGTTCGCCCT GGCCTGTACG GGCTTGACCA GCCTGTTCCT GGCCCTGATC
AACCGCAAGC AACGCCAGCT GCAGCAACGC AACCGAGAAC TGCGCAGCTC CCAGGCGCAA
CTTGAGCGGC TGGCCCATTA CGACACGATC ACCGGCTTGC CCAACCGCGT GCTGTTCCAG
CAGCAACTGG CGGATGCAAT TCTCCAAGGC GATGGTCTGG CTGTGCTGAT GCTGGACATC
GATGGTTTCA AGCAGGTGAA TGACAGCCTC GGCCATGCCA TGGGCGACCT GTTGCTGCAG
CAAGCCACCG CGCGGTTCCT GCAGGAGCTG GCCTCGGCTG ACCGGGTGTG CCGCCTTGGC
GGCGACGAGT TCGTTTTCAT GTTGCGCGGC ACCCAGGGCC AGGTCAGCCA CCAGGTGGCC
CACCTACTGC GCTGCCTGCA ACGCCCGTTC GACCTCAATG GCAGTACCGC ACTGGTCACC
GGCAGTATCG GCCTGGCCAG GTGTCCGCAG CACGGTGAGG ATGTTGGCAG CCTGCTGCGT
CACGCCGATA CCGCGATGTA TGCAGCCAAG GAAAGCGGGC GCAACGCCTG GCGCCCTTAC
CACACAGATA TGACTGCCCG CCTGCAGCAG CGCCTGGAGC TTGAGCGCAA TCTGCGCCGT
GCCTTGCAGG CGAACGAGTT CGAGCTCTGG TATCAACCCA AGGTTGACCT GTTCAGCGGC
TGCCTGCAGG GTGTCGAGGC ATTGTTGCGC TGGCGCGACC CTGTTCATGG CCTGGTGTCA
CCTGCCGAGT TCATCCCGTT GGCAGAGCGC ACGGGCTTGA TCATTCCGCT GGGCGAGCGG
GTATTGGCGC TTGCCTGCGC GCAGATGGCT GCCTGGCGCG ACGAGGACCG TATACCCGGG
CCAATGGCGA TCAACGTGGC GGCGCTGCAG ATCGAACGCA GCGACTATGT CTCCAGCCTG
GCCCAGGCGC TAGAGTGTCA CGGCCTGGCG CCAAGCCTGC TGGAAGTGGA AATCACCGAA
AGTCTGCTGA TGGAAAGCCA GCAACAGGCC TGTGAGGTAC TGGCCCAATT GCAGGCCATG
GGCGTGACCA CGGCAGTGGA CGACTTCGGC ACGGGTTATT CGTCACTGGC TTATTTGCGA
GCGCTGCCGA TCGATCACCT GAAGATCGAT CGTGCGTTCA TCAAGGACCT GCCGGACGAT
GACGATGCAG TGGCCGTCGC CCGGGCGATC ATCGACCTGG GCCATGCGCT GGGCTTCCGG
ATCACTGCCG AGGGCATTGA AACCCAGGAA CAGTATGACT TCTTGCGCAA TGCCGGATGC
GACCAGGGGC AGGGCTATCT GCTGGCCCGG CCGATGCCGG CGGCGGACCT TGCTCGCTGG
CTGGCGACCC GTGCCGAGCG GGGTCGCCAG GGCAGTGTCT GA
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| Protein sequence | MIPSNSPLPD EPPPTGLLRR SLGSLMPVGF ALAGIALSVL LGQLDVQRQP DGLMASPLVS
PLLWFALACT GLTSLFLALI NRKQRQLQQR NRELRSSQAQ LERLAHYDTI TGLPNRVLFQ
QQLADAILQG DGLAVLMLDI DGFKQVNDSL GHAMGDLLLQ QATARFLQEL ASADRVCRLG
GDEFVFMLRG TQGQVSHQVA HLLRCLQRPF DLNGSTALVT GSIGLARCPQ HGEDVGSLLR
HADTAMYAAK ESGRNAWRPY HTDMTARLQQ RLELERNLRR ALQANEFELW YQPKVDLFSG
CLQGVEALLR WRDPVHGLVS PAEFIPLAER TGLIIPLGER VLALACAQMA AWRDEDRIPG
PMAINVAALQ IERSDYVSSL AQALECHGLA PSLLEVEITE SLLMESQQQA CEVLAQLQAM
GVTTAVDDFG TGYSSLAYLR ALPIDHLKID RAFIKDLPDD DDAVAVARAI IDLGHALGFR
ITAEGIETQE QYDFLRNAGC DQGQGYLLAR PMPAADLARW LATRAERGRQ GSV
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