Gene PputW619_2716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_2716 
Symbol 
ID6111667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp3008719 
End bp3010101 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content64% 
IMG OID641622503 
Productputative sigma54 specific transcriptional regulator 
Protein accessionYP_001749577 
Protein GI170721889 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0740444 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0319328 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGAAA GCAATACCCT CAAGGACTAT CCTCAGGTAC GGCAACTGGC GATCCGCTCG 
CTGTTCGAAA TCATCGAGCA GTCCAGCGAG GGCACCGTGA TCGTCGACCG CGAGGCGCGA
ATCGTGTGGA TGAACGAACG CTACGCCCGT CGGTTTGGCC TGGCCGATGC CGCCAGTGCC
ATAGGCCAGC CATGCGAAAC GGTGATCCCG GGCAGCCTGA TGCGCGAGGT GGTGAGTAAC
GGCCGGCCGA TCCTGCTGGA CATGCTCGAC ACCCCCAACG AGCCACTGGT GGTCATGCGC
CTGCCGATCC ACGATGCGCA GGGCGCGCTG ATCGGTGCCA TCGGCTTTGC CCTGTTCGAC
GAATTGCGCA GCCTGTCGCC ACTGCTCAAG CGCTATTCGA GCATGCAGCA GGAGCTGGCC
ACGACACGCT CGCAACTGCG CGCGCGCCAG GCCAAATACA GTTTTGCCCA GTTCGTCGGC
AGCAGCGCGG CGAGCCTTGA GGCCAAACGC CGTGCCAGGC GCGGCGCGGC CAGCGAATCG
CCAGTGTTGT TGCTCGGCGA AACCGGTACT GGCAAGGAGC TGCTGGCCCA TGCCATTCAC
GCAGCCTCGG CACGTGCGCA CAAAGCCTTT GTCAGCATCA ACAGTGCAGC GATTCCCGAA
GCGCTGCTGG AGGCCGAGTT TTTCGGCACG GCCCCAGGCG CCTTTACCGG CGCTGACCGC
AAAGGGCGCA GCGGCAAGTT GCAGTTGGCC GAAGGCGGCA CCTTGTTCCT CGACGAAATC
GGCGACATGC CCTTGGCCCT GCAAAGCAAG CTGCTGCGTG TACTGCAGGA GAAGGAATAC
GAACCGGTGG GCTCGAACCA GATGCTGCGC AGCGACGTGC GCATCATCGC GGCCACTTCA
ATCGATTTGC AGGCGGCCAT GGCCCGCGGG GCGTTTCGCG CCGATCTGTA TTACCGCCTG
AATGTGCTGC CAATCCAGGC TCCGCCGCTG CGCGAGCGCC TCGAAGACCT GCCCGCGTTA
TGCGAGGCGA TCCTGGCCGA ACTGGGCAGC CAGTTCGAGC TGGAGCCCGA TGCGCTGCAA
TTGCTGGCAC GCCATGCCTG GCCCGGGAAC ATCCGTGAGC TGCGCAACGT GCTGGAACGG
GCAACCCTGC TGGCGGACCA GCCGCGCCTT ACCGCCTTGG ACTTGCGCGA GGCACTAGGG
CCGGTGGCGC CGCTTGCCAC CACTACCGTG CGGCAAAGCT ACCGCGATGC CTGTGCGCAA
TTCGAGCGCA AGCTCATTGC CGACACATTG GCCGCACACG CCGGCAATGT GGTGGAAGCA
GCTAAAGCAT TGGGTTTGGG GCGTTCGACG TTCTACAAGA AGAAAGTGGC ATTGGGGGTA
TGA
 
Protein sequence
MQESNTLKDY PQVRQLAIRS LFEIIEQSSE GTVIVDREAR IVWMNERYAR RFGLADAASA 
IGQPCETVIP GSLMREVVSN GRPILLDMLD TPNEPLVVMR LPIHDAQGAL IGAIGFALFD
ELRSLSPLLK RYSSMQQELA TTRSQLRARQ AKYSFAQFVG SSAASLEAKR RARRGAASES
PVLLLGETGT GKELLAHAIH AASARAHKAF VSINSAAIPE ALLEAEFFGT APGAFTGADR
KGRSGKLQLA EGGTLFLDEI GDMPLALQSK LLRVLQEKEY EPVGSNQMLR SDVRIIAATS
IDLQAAMARG AFRADLYYRL NVLPIQAPPL RERLEDLPAL CEAILAELGS QFELEPDALQ
LLARHAWPGN IRELRNVLER ATLLADQPRL TALDLREALG PVAPLATTTV RQSYRDACAQ
FERKLIADTL AAHAGNVVEA AKALGLGRST FYKKKVALGV