Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_2716 |
Symbol | |
ID | 6111667 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 3008719 |
End bp | 3010101 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641622503 |
Product | putative sigma54 specific transcriptional regulator |
Protein accession | YP_001749577 |
Protein GI | 170721889 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0740444 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0319328 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGAAA GCAATACCCT CAAGGACTAT CCTCAGGTAC GGCAACTGGC GATCCGCTCG CTGTTCGAAA TCATCGAGCA GTCCAGCGAG GGCACCGTGA TCGTCGACCG CGAGGCGCGA ATCGTGTGGA TGAACGAACG CTACGCCCGT CGGTTTGGCC TGGCCGATGC CGCCAGTGCC ATAGGCCAGC CATGCGAAAC GGTGATCCCG GGCAGCCTGA TGCGCGAGGT GGTGAGTAAC GGCCGGCCGA TCCTGCTGGA CATGCTCGAC ACCCCCAACG AGCCACTGGT GGTCATGCGC CTGCCGATCC ACGATGCGCA GGGCGCGCTG ATCGGTGCCA TCGGCTTTGC CCTGTTCGAC GAATTGCGCA GCCTGTCGCC ACTGCTCAAG CGCTATTCGA GCATGCAGCA GGAGCTGGCC ACGACACGCT CGCAACTGCG CGCGCGCCAG GCCAAATACA GTTTTGCCCA GTTCGTCGGC AGCAGCGCGG CGAGCCTTGA GGCCAAACGC CGTGCCAGGC GCGGCGCGGC CAGCGAATCG CCAGTGTTGT TGCTCGGCGA AACCGGTACT GGCAAGGAGC TGCTGGCCCA TGCCATTCAC GCAGCCTCGG CACGTGCGCA CAAAGCCTTT GTCAGCATCA ACAGTGCAGC GATTCCCGAA GCGCTGCTGG AGGCCGAGTT TTTCGGCACG GCCCCAGGCG CCTTTACCGG CGCTGACCGC AAAGGGCGCA GCGGCAAGTT GCAGTTGGCC GAAGGCGGCA CCTTGTTCCT CGACGAAATC GGCGACATGC CCTTGGCCCT GCAAAGCAAG CTGCTGCGTG TACTGCAGGA GAAGGAATAC GAACCGGTGG GCTCGAACCA GATGCTGCGC AGCGACGTGC GCATCATCGC GGCCACTTCA ATCGATTTGC AGGCGGCCAT GGCCCGCGGG GCGTTTCGCG CCGATCTGTA TTACCGCCTG AATGTGCTGC CAATCCAGGC TCCGCCGCTG CGCGAGCGCC TCGAAGACCT GCCCGCGTTA TGCGAGGCGA TCCTGGCCGA ACTGGGCAGC CAGTTCGAGC TGGAGCCCGA TGCGCTGCAA TTGCTGGCAC GCCATGCCTG GCCCGGGAAC ATCCGTGAGC TGCGCAACGT GCTGGAACGG GCAACCCTGC TGGCGGACCA GCCGCGCCTT ACCGCCTTGG ACTTGCGCGA GGCACTAGGG CCGGTGGCGC CGCTTGCCAC CACTACCGTG CGGCAAAGCT ACCGCGATGC CTGTGCGCAA TTCGAGCGCA AGCTCATTGC CGACACATTG GCCGCACACG CCGGCAATGT GGTGGAAGCA GCTAAAGCAT TGGGTTTGGG GCGTTCGACG TTCTACAAGA AGAAAGTGGC ATTGGGGGTA TGA
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Protein sequence | MQESNTLKDY PQVRQLAIRS LFEIIEQSSE GTVIVDREAR IVWMNERYAR RFGLADAASA IGQPCETVIP GSLMREVVSN GRPILLDMLD TPNEPLVVMR LPIHDAQGAL IGAIGFALFD ELRSLSPLLK RYSSMQQELA TTRSQLRARQ AKYSFAQFVG SSAASLEAKR RARRGAASES PVLLLGETGT GKELLAHAIH AASARAHKAF VSINSAAIPE ALLEAEFFGT APGAFTGADR KGRSGKLQLA EGGTLFLDEI GDMPLALQSK LLRVLQEKEY EPVGSNQMLR SDVRIIAATS IDLQAAMARG AFRADLYYRL NVLPIQAPPL RERLEDLPAL CEAILAELGS QFELEPDALQ LLARHAWPGN IRELRNVLER ATLLADQPRL TALDLREALG PVAPLATTTV RQSYRDACAQ FERKLIADTL AAHAGNVVEA AKALGLGRST FYKKKVALGV
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