| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2679 |
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| Symbol | |
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| ID | 6111630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 2962126 |
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| End bp | 2964453 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641622466 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001749540 |
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| Protein GI | 170721852 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATACGCC GTTTTCTCTC GTCAGCAGGC CTGCTGCGCC TGTTGATCCT GATGCTCTGT
GCAGCCACCC TGACCTTCCT CTGGGGGGTG CACTTCAGCC AGAAGGCCGC CGCGCGCCAG
GATGCGCTGA TGGCCAAGGC GGCCGAGCAC CAGAACCTCG CCCGCATCGT CGCTGAAAGC
CTGCGTCAGC TGGTTGATCG TGCCCAGGCT GTGGGCCGCG TCACCCAGGA CGATATGAAA
GCACTGCCCC AAGGCAGCCT GAGCCTGGCA CGGTTGCTTG CCGAAGACCC AGTGTTCAAA
CGCATGGGCC TGTATGACCG TAACGGCAAG CTGCTGTCAG CCAGCCACGT CAACGAAGTG
CCAGAGCTGC CGGACGGCTG GCTGCAGCAG TTGAAACTGC ATGTCGCGCA CTACGGTTTC
AAACCCTTCA TGCCGCGTGT GGAACCGGGC CTCACCCCGT CGGCCCTGCC GAACTGGCGC
CTGCCCTTCC TCTTGCCGCT GACCAGCCTG CCAGGCCGCG AGATCGACAA GATCCTGGTG
GTGCAGCTCG ATATCGGCTA CCTCGCGGTG CTTTTCCAGC ACATTGACCT GGGCAATACC
GGCCTCATGC GCCTGCTGCA GGACGACGGC CAGGAACGCC TACGTATCGA CACCCGCGGC
GTGGTCATGG CTGTTGACGA TTTCGAACCC GGCCTGTCGG CACCGGGCAG TGAGTCGGGC
CTGCTGATCC AATATGCATC CGGCCAGCCC TATCAGAGCC TGTACAGGCG CATAGCCGAG
CGCGGTTTCA CCATCATCGT CAGCCAGCGC ATCGACGAAA TCCTCGCCCC CACAGCCCTG
GCGTATTCAC GTCAGTTCTG GTTGAACTTG AGCATGACGC TGATGATCCT TGCCAGTCTG
GTCTGGACCC TGCGTCTGCT GCACAAGCGC CAAGAGGCTT TCAGCGCCCT TGAGCATGCG
CAACAGGTCA ACCAGCAACT GATCGGCCGC CTGGAGGATG CGCACCGTCG CAGCAGCCAG
GCGGCCGCCA CTGACCACCT CAGCGGGTTG CACAACCGCC GCCAGTTCGT CGAGGTGGCG
GGCCTTGCGC TGACCCGCCA GCGCGGCAAG CGTCGGCTTA TGGCAATCCT GTTCATCGAC
ATGGACCGCT TCAAGTCGAT CAACGATTCG CTCGGACACA AGATTGGCGA CTTGCTGCTG
CAGGCCGTGG CCGGGCGCAT TCAGCGCCTG CTAGAGCAAG GCGACGAAGC CTCGCGCTTT
GGAGGTGATG AATTCGTGGT ACTGCTGGCC GGCGAACGCA GTGAAGAACA GATCAATACC
TGGGTGCGCG AACTGGTGCA AAAACTGTCG GCTACCTACT CCCTCGACGG CCAGGAGGTC
AATACCAGCC CCAGTGTCGG CATCAGCATC TGCCCGCGCG ACGGCCAGGA CATTGACAGC
CTGATCCGCT GCGCCGACGC CGCCATGTAT TCGGCCAAGC AGGCCGGGCG TGCCCAGTAC
CGCTTCTTCG ACCCGTCGCT GAACCTTTCC GACATCCACG CCTTTACTCT TGAACAAGCC
TTTGGCAGTG CCCTGGCCGA GCGTCAGTTC GTGTTGCACT ACCAACCGCA AATCCGCCTG
GATACCCAGC GCGTGCTGGG CTATGAAGCC CTGGTACGCT GGGACCACCC GGAATTTGGC
CTGCTCTACC CGGACCGCTT CATCGGCTTG GCCGAACGCA GCGGTTTCAT CATCGAGCTG
GGCTGGGAAG TGCTGCGCCT GGCCTGCGAA GAGCTGGCAC GCTGGGATGT GCAGGGCCGC
GACAACCGCC TGGCGGTGAA TGTGTCGGCA CTGCAGCTGC GCCAGGCCGA CTTCAGCACC
CGCCTGCTGA GCAAGTTGCA GTTTTACGGC ATCAGCCCGC AGCGCCTGGA GCTGGAAATC
ACCGAGACCA CCATTCTGGA CCCGGAAGGC ACAGCGGTTG AACATCTGCA CCGCCTGCGC
GCGGCCGGCC TGGGCATCAG CCTCGACGAC TTCGGGCGTG GCTACGCGGG GTTCGCCCAC
TTGCAGTCAC TGCCGCTGAG CAAGCTCAAG ATTGACCGGT CGCTGATCGC ACCGCTGTCC
AACAGCTACG ACGACAGCCC GATCGTCTCC TCGACCATCA TCCTGGCCAA GCGCCTGGGG
CTGGAGGTGG TGGCCGAAGG GGTGGAAACC CGCGAACAGG TGGTGTGCCT GAAACTTGCC
GGTTGTGATA TTGCCCAGGG CTACCACTTC AGTCGCCCCT TGTCGCCGGC GCAATTGCGT
GAATACCCGC CTTTCAACGG CATCGAGGAA AAGCCATGCG TGCTCTGA
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| Protein sequence | MIRRFLSSAG LLRLLILMLC AATLTFLWGV HFSQKAAARQ DALMAKAAEH QNLARIVAES
LRQLVDRAQA VGRVTQDDMK ALPQGSLSLA RLLAEDPVFK RMGLYDRNGK LLSASHVNEV
PELPDGWLQQ LKLHVAHYGF KPFMPRVEPG LTPSALPNWR LPFLLPLTSL PGREIDKILV
VQLDIGYLAV LFQHIDLGNT GLMRLLQDDG QERLRIDTRG VVMAVDDFEP GLSAPGSESG
LLIQYASGQP YQSLYRRIAE RGFTIIVSQR IDEILAPTAL AYSRQFWLNL SMTLMILASL
VWTLRLLHKR QEAFSALEHA QQVNQQLIGR LEDAHRRSSQ AAATDHLSGL HNRRQFVEVA
GLALTRQRGK RRLMAILFID MDRFKSINDS LGHKIGDLLL QAVAGRIQRL LEQGDEASRF
GGDEFVVLLA GERSEEQINT WVRELVQKLS ATYSLDGQEV NTSPSVGISI CPRDGQDIDS
LIRCADAAMY SAKQAGRAQY RFFDPSLNLS DIHAFTLEQA FGSALAERQF VLHYQPQIRL
DTQRVLGYEA LVRWDHPEFG LLYPDRFIGL AERSGFIIEL GWEVLRLACE ELARWDVQGR
DNRLAVNVSA LQLRQADFST RLLSKLQFYG ISPQRLELEI TETTILDPEG TAVEHLHRLR
AAGLGISLDD FGRGYAGFAH LQSLPLSKLK IDRSLIAPLS NSYDDSPIVS STIILAKRLG
LEVVAEGVET REQVVCLKLA GCDIAQGYHF SRPLSPAQLR EYPPFNGIEE KPCVL
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