| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2651 |
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| Symbol | ligD |
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| ID | 6111602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 2934643 |
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| End bp | 2937141 |
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| Gene Length | 2499 bp |
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| Protein Length | 832 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641622438 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001749512 |
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| Protein GI | 170721824 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.819142 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.570676 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCCA AGCCCCTGCA GGAATATGAG CGCAAGCGCG ACTTCAATGC CACACCCGAG
CCCAGTGGCA AGCGCGGCCG TGCAAAACGT AATCATGCCC TGCAGTTCTG CATTCAGAAG
CACGACGCCA GCCACCTGCA TTACGACTTC CGTCTGGAAC TGAACGGTAC GCTGAAAAGC
TGGGCCATCC CCAAGGGGCC CTCCCTGGAC CCCAAGGTGC GGCGCCTGGC GGTACACGTA
GAGGATCACC CTCTCGACTA CGCCGATTTC GAAGGCAATA TCCCGGAGGG TCACTATGGC
GCCGGCGATG TAATCGTCTG GGATCGTGGC GTCTGGGAAC CAGAGGGTGA CGCAAACCAG
GCCTATGCCA AGGGCAAGCT GCGCTTTCGC TTGCAAGGAG AGAAGCTGAG CGGCGTGTGG
AACCTGTTCC GCACCCGTCT GGCAGGCAAG AAAGAGCAGT GGATGCTGGT CAAGTCCCAC
GACGCTCAGG CACGCAGCGA GGCCGACTAC AGCATCGTTG AAGCGCAGCC TGACAGCGTG
ATCAGCGATC GCACGCTGGT GCCGCGACGC AATGCCAGCG CCAAACCGGC GCCGGCGCCC
AAGCGCAAGC GGGCCGGTGC GGGCAAGAAA GCGGCCTTGC CCGGTCTACT GCAGCCGCAG
CTTGCGACCC TGGTGGATTC CCCCCCCGCT GGCGACTGGC GCTATGAAGT CAAGTTCGAC
GGTTATCGCG TGCTTGCCCG GATTGAAGGC GACGACGTGC GGCTGTTCAC CCGTAACGGC
CATGACTGGA GCCACAAAAT GCCACGACAG GTGGCTGCGC TTCGCGCTTT AGGTCTGGAC
AGCGCCTGGC TTGACGGTGA GATGGTCGTC AACGGCGACA ACGGGGCGAC GGACTTCCAG
GCCTTACAGA ATGCCTTCGA CACTGCCCAC GACGAGCAAA TCGTCTATTA CCTGTTCGAC
CTCCTCTTCC TGGGTGGCCA GGACCTACGC GCGCTGCCCT TGGAGGACCG GCGCAAAGCA
TTGGGTAAAC TGCTTGAGCA GGATCAGTCC GAGGTTCTGG AGTTTTCCGC CGACTTCCAG
CAACCGGTGG AGTCGCTGCT CGACAGCGCC TGCCGCCTGG AGCTCGAAGG GTTGATCGGC
AAGCGCGCCG GTAGCCCGTA TACAGGCCGG CGCAGTGCTG ACTGGATCAA GCTCAAGTGC
AAACAGCGCC AGGAGTTTGT GATCGTCGGG TTCACCGACC CCAAGGGGAG CCGCAGCGGC
TTCGGTGCGC TGCTGCTCGC CCTGCATGAC CCGGACACCG GTGAGCTCCG CTATGCCGGC
AAGGTCGGGA CCGGCTTCAG CGCCACCACG CTCGACAGCA TCCATGCGCG CCTCAAACCC
CTGGAAATCG GCAAACCCGC CCTGCCCCGG CCACCCACCG GGGCTGAAGC CCGAGGAGTT
CATTGGCTCA AGCCAAAACT GATGGCCGAG GTTTCTTATG CGCAAATGAC CCGGGACGGC
GTGGTTCGCC ATTCGGTTTT CCATGGGCTG CGCGACGACA AACCTGCCAG CGCCATCGAC
CAGGAGCGTG CCATGCCAGC CAAGACCGTG CCAAAAGCCA AGCGTGCCAA AGCGACAGAA
GACCTGGGCG ACCTGCGCCT GACGCATCCG GACAGGATCA TCGACGCCAG CATTGGTGCG
ACAAAGCGGG AGATTGCCGA ATACTACGCC GGCGTCAGTC AGTGGATCCT GCCGCAACTC
AAAGACCGCC CGGTGGCGCT GGTACGGGCG CCGGAGGGCC TCAATGGCGA ACTGTTCTTC
CAGAAGAACG CCGGCCAGTT GCATATCGCC AATGTGCTCA GTTACGACAA GGCCGAAGCC
GGCCAGGCGG CGATGGTCAT CAACCGTCCT GACACGTTGC TCGGTGCCGT GCAGATGAAC
ATGCTTGAAC TGCACACTTG GAATGCCACC GACAAAGACT TCGACAAGCC CGACCGCTTT
GTGCTCGACC TTGACCCGGA CCCGGCATTG CCCTGGAAGG CCATGCTCGA TGCTACTCAG
CTCGCCCTCA CGTTGCTCGA TGAACTGGGC CTCAAAGTGT TCCTCAAGAC CAGCGGTGGC
AAAGGCATGC ACCTGGTGGT GCCATTGACC CGCCGTGCGG GCTGGGACGA GGTTAAAGAC
TTCAGCCATG CCATCGTCAA TTACCTGGCC AAGCTGTTCC CCGACCGGCT CAGCGCCGTG
TCCGGGCCAA AGAACCGGGT CGGACGGATC TTCATCGATT ACCTGCGCAA CGGTAAAGGC
GCGACCACCG CCTGTGCCTA CTCCCTGCGC GCCCGGGAAG GCCTGCCGGT GTCGGTGCCG
ATCTGGCGCG AGGAACTTGG CCACCTCAAG GGCGCCAACC AGTGGCACAT CGGCAACCTG
CACGAACGCT TGGCCGAGGT CGATGACCCT TGGGCGGACA TGAGCAAGAC CCGACAGTCA
ATCACAGCGC GCATGCGCAA ACAGATGGGG ATGACATGA
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| Protein sequence | MTAKPLQEYE RKRDFNATPE PSGKRGRAKR NHALQFCIQK HDASHLHYDF RLELNGTLKS
WAIPKGPSLD PKVRRLAVHV EDHPLDYADF EGNIPEGHYG AGDVIVWDRG VWEPEGDANQ
AYAKGKLRFR LQGEKLSGVW NLFRTRLAGK KEQWMLVKSH DAQARSEADY SIVEAQPDSV
ISDRTLVPRR NASAKPAPAP KRKRAGAGKK AALPGLLQPQ LATLVDSPPA GDWRYEVKFD
GYRVLARIEG DDVRLFTRNG HDWSHKMPRQ VAALRALGLD SAWLDGEMVV NGDNGATDFQ
ALQNAFDTAH DEQIVYYLFD LLFLGGQDLR ALPLEDRRKA LGKLLEQDQS EVLEFSADFQ
QPVESLLDSA CRLELEGLIG KRAGSPYTGR RSADWIKLKC KQRQEFVIVG FTDPKGSRSG
FGALLLALHD PDTGELRYAG KVGTGFSATT LDSIHARLKP LEIGKPALPR PPTGAEARGV
HWLKPKLMAE VSYAQMTRDG VVRHSVFHGL RDDKPASAID QERAMPAKTV PKAKRAKATE
DLGDLRLTHP DRIIDASIGA TKREIAEYYA GVSQWILPQL KDRPVALVRA PEGLNGELFF
QKNAGQLHIA NVLSYDKAEA GQAAMVINRP DTLLGAVQMN MLELHTWNAT DKDFDKPDRF
VLDLDPDPAL PWKAMLDATQ LALTLLDELG LKVFLKTSGG KGMHLVVPLT RRAGWDEVKD
FSHAIVNYLA KLFPDRLSAV SGPKNRVGRI FIDYLRNGKG ATTACAYSLR AREGLPVSVP
IWREELGHLK GANQWHIGNL HERLAEVDDP WADMSKTRQS ITARMRKQMG MT
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