| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2574 |
|---|
| Symbol | |
|---|
| ID | 6111525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 2857015 |
|---|
| End bp | 2859549 |
|---|
| Gene Length | 2535 bp |
|---|
| Protein Length | 844 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641622363 |
|---|
| Product | response regulator receiver modulated GAF sensor protein |
|---|
| Protein accession | YP_001749437 |
|---|
| Protein GI | 170721749 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase)
[COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.969915 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGC AACCTGACGT CAATTTGACC AATTGTGATC GCGAACCGAT CCAGATACCG
GGCAGCATTC AGCCACACGG CTGTCTGCTC GCTTGCGACG CCTCTGCCAG CCTGGTCCTG
CGCCACTCCG TAAATACCTC CCAAATGCTT AGCGTGACCG GCGGCGTCAA TGGTCAGAGA
CTTGAGGCGA TCATCGGAAT CGAGGCTGCC CACACGGTTC GCAACTCCCT GGCACGTGTG
AAGGAAGCTT CCCGGCCAGC GCTGTCATTC GGCGTGCCGC TGGCTTCAGG CCAGGCGTTC
GATGTGTCTG CCCACCTGTT CAAGGGTACT GTCATCCTCG AATTCGAGCC CGCCAGCCAG
AGCATCGCCG AACCGATCGA ACTGGTGCGC ACGGTCATCG CCCAGTTGCG CGAGATCGAC
CGCTCCGACA GGCTTGTGGC CGATACCGCC AAGCGTGTTC GTGCACTGCT GGGTTACGAC
CGCGTGATGA TCTATCAGCT CGGCGCCGAC GGCGCTGGCA AGGTTGTAGC CGAAGCCCGG
CGTAGCGGGC TTGAAAGCTT TCTGGGGCAA TACTTTCCGG CATCGGATAT TCCCCAGCAG
GCCCGTGCGC TGTATGTGCG CAACCCTGTG AGGGTGATTG CCGACGCCAA CTTCAAAACC
GTGCCGCTCG AGCCGGTGCT GGATTTGTCT GGCGAGCCGC TCGACCTGTC CTACGCGCAC
CTGCGCAGCG TTTCGCCGAT TCACTGCGAA TACCTGAACA ACATGGGCGT GGGCGCATCC
ATGTCCATTT CAGTGATCGT CGACGGTGCC CTTTGGGGGC TGATCGCCTG CCACCATTAC
GCACCACGCA CGCTGAGCAT GGGCCAACGG GTCGCCGCAG AAATGTTCGG TGAGTTCTTT
TCCCTGCATA TCCAGACACT GCAGGCCAGG CAAACCCTGG AGGCCGCCGC CCACGCCCGT
CAGGTGCTCG ACAACCTGCT GCACGATGCC CACCGCACAA CGGACATCGA TGAACTGCTG
CGCGCTCGCT TGAGCGACTT CCAGGCCCTC ATCCCCTGCG ATGGCATTGG CATGTCGTTG
CAAGGCCAAT GGACCGTGGC CGGGCTGACG CCGCCAAGGC AGGCGGTGCC CGGGCTGCTC
AGCTTCGCCG AGGGTGTTGC CGAGGGCCGC ACCTGGGCGT CGAACTGCCT GTCGCTGGCG
CACCCTGCAG CACAGGACTA TGCCATGGAG GTCTCGGGGG TACTGATCAT CCCGATGTCG
CAGCACCCAC GGGACTACCT CATGCTGTTT CGCAAGGAGG TGATCGAAAC CCTGGATTGG
GCCGGCGACC CCAACAAGAC CTACGAGAGC GGGCCCCTGG GTGACCGCCT CACCCCCCGC
AAGAGCTTCG CCGTGTGGAA GCAGACGGTC CACCACCACT GCCTGCCCTG GTCCGAGCAG
GACCGCCAGT TTGGCGAAGC CATCCGCGCG GCGGTGGTCG AGGTCGCGCT GCACAACAGC
GAGCTACTGG CCGATGAACG CTCCAAGGCG CAGGTTCGCC AACGCATGCT CAACGAGGAG
CTCAACCACC GGGTGAAGAA CATTCTTTCG CTCATCGGTG CGTTGGTGGC CCACCCCACC
TCAGAACACC AGACCCTCAA CGGCTATGTG GCGACGCTCA AGGGTCGGAT CCAGGCGTTG
TCACTGGCAC ACGATCAGGT GGTCCGGGGT GACGGTGGTG GCCGTTTTGC CAACTTGCTG
GAGGCCGAAC TGTCCCCGTA CCGCACCAGC GCCGATGCAC TGGTACTCAC CGGCCCCGCG
CTGTTGCTCG ATGCCCGCGC CTATTCGGTG ATGGCTTTAG TGCTTCATGA GCTGGCGACC
AACGCGGCAA AGTACGGGGC CCTGTCCAGG GCGGGCGGCA GGTTGTCTGT CGACTGGGTT
GTCGACACGG GCGGGGCCTG TGACATCACG TGGCGCGAGA GCGGCGGGCC AACGGTACGG
GCACCGACGC GCAGCGGCTT CGGCTCTGTT CTGATCGAAC GAAGCATCCC GTTCGACCTC
GGTGGCAGCA GCACCCTTGA ATACAGGCCA GAGGGCCTGC AGGGGTTCTT CCGGATTCCG
GCAAAGCACC TGACGCTGGT CGAAGAGCTC GCCAGCGATA CCCCGGCGGT TGCACAGCAG
CCACAGGTAG ACTGCAGCAG CCTGGTCAGC GCGCGTGTGC TCATACTCGA AGACCAGTTG
GTGATTGCGG TTGGCCTTGA GCAGATTCTG GCCGATGCAC AGGTGCAGGA TGTGCTTACC
GCAAGCTCCG AAGCCGAAGC CCTGAAGCTG CTTGCCAGCC ACACGCCGGA TGTCGCAGTG
CTGGACATCA ACCTGGGTAC CGGCACCTCC ATTGCCGTGG CCGAAGCCCT CACAAGCCTG
GGTATCCCCT TCCTGTTCGC CACCGGCTAT GGCGACAGCC TGAACATCCC TGACCATTTG
AAGCATGTGC CGGTGGTGCG CAAGCCCTAC GACGCAGCCT CGATCCTGCA CAACCTGGAA
AACCTGCTGG CCTAG
|
|---|
| Protein sequence | MTLQPDVNLT NCDREPIQIP GSIQPHGCLL ACDASASLVL RHSVNTSQML SVTGGVNGQR
LEAIIGIEAA HTVRNSLARV KEASRPALSF GVPLASGQAF DVSAHLFKGT VILEFEPASQ
SIAEPIELVR TVIAQLREID RSDRLVADTA KRVRALLGYD RVMIYQLGAD GAGKVVAEAR
RSGLESFLGQ YFPASDIPQQ ARALYVRNPV RVIADANFKT VPLEPVLDLS GEPLDLSYAH
LRSVSPIHCE YLNNMGVGAS MSISVIVDGA LWGLIACHHY APRTLSMGQR VAAEMFGEFF
SLHIQTLQAR QTLEAAAHAR QVLDNLLHDA HRTTDIDELL RARLSDFQAL IPCDGIGMSL
QGQWTVAGLT PPRQAVPGLL SFAEGVAEGR TWASNCLSLA HPAAQDYAME VSGVLIIPMS
QHPRDYLMLF RKEVIETLDW AGDPNKTYES GPLGDRLTPR KSFAVWKQTV HHHCLPWSEQ
DRQFGEAIRA AVVEVALHNS ELLADERSKA QVRQRMLNEE LNHRVKNILS LIGALVAHPT
SEHQTLNGYV ATLKGRIQAL SLAHDQVVRG DGGGRFANLL EAELSPYRTS ADALVLTGPA
LLLDARAYSV MALVLHELAT NAAKYGALSR AGGRLSVDWV VDTGGACDIT WRESGGPTVR
APTRSGFGSV LIERSIPFDL GGSSTLEYRP EGLQGFFRIP AKHLTLVEEL ASDTPAVAQQ
PQVDCSSLVS ARVLILEDQL VIAVGLEQIL ADAQVQDVLT ASSEAEALKL LASHTPDVAV
LDINLGTGTS IAVAEALTSL GIPFLFATGY GDSLNIPDHL KHVPVVRKPY DAASILHNLE
NLLA
|
|---|
| |