| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2525 |
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| Symbol | |
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| ID | 6111477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 2809651 |
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| End bp | 2811336 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641622318 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001749392 |
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| Protein GI | 170721704 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.949888 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTGGCCA AGGTCAATCG CGATGCCGGG CAAGCCTTCG AGTACGACGA TGCCGACCGG
GTGCTGAATA TCCAGCGCCT GCCGACCAGC ACGGGTAAAC AATTGGGCAT CACGGATGAA
AATCTGAGTG ACCGCTACGA GCTGCTGGGA CGGCTGACCC AGGAACTCAC CCCGAGCGGT
GTAGTGGATT ATAAGTACGA AGCGCGCAGC AACCTGATCA CGCTGATCCT GCCTGACGGG
CGCAAGGTCA ACCATCTGTA CTACGGCAGC GGCCATCTGC ACCAGCTGAA CCTGGACGGC
CAGGTCATCA GCGACATGGA GCGCGATGAC CTGCACCGCG AGGTGTACCG CACGCAGGGC
AAGCTCACCA GTTGCTTTGG CTACGACGCC ATGGGGCGCA AGGCTTGGCA GTTTGCGTCG
ACCCTGCCGG CGGAAAAGCT GTCGCAAGTG CAGAACCCCG GCATCAACAC CTCACTGCTG
GTGGAGCACG CTTACAACCC GATTCACCGT CGCTACCAGT ACGACCCGGC GGGCGAATTG
GTACGCACGC TGGACAAGCT GCGCGGCGAG ATCAAGTACG AGTACGAAGC CAACGGCCAG
TTGCACAGCC GCGATACTGG TTCCCTCGTA GGCAGCGAAG AGTTCCGCTA TGACCCGGCG
GCCAACAGGC TCGACTTCAA CGCTCGGCAG TTTGAGAAGG TGAAGGACAA CCGCATCAAG
CGTTGGCGCG ATCAGGAGTA CCGCTACGAT CCGTGGGGCA ACCTGATCGA GAAGCGCTCG
GGGCATAGCA AGCTGCAGAA CTTTGCCTAT GACTGCGAGA ACCGGCTGGT TCGGGCGGAG
ACGCTGGTCA ACGGCAAGCT GGAAAGTACG GGCGCTTATC GCTATGACAG CCTGGGGCGG
CGGATTGCCA AAACCGCTGA AATCGGCGGC ACCTCGGAAC AAAAGCGCTT CCTCTGGCAA
GGGCTGAGGA TGCTGCGTGA GGAGACGCCT GGGCAGAGTA TTCTGTATTT CTATGAGCCG
GGCAGCTATG CACCGTTGGC TCGTGTTGAT CAGGCGGAGG GCCAAGAGCA GAAGGTCTAC
TACTTCCACA CCGATCAGAT CGGCACGCCC CTTGAAATGA GCAATAGTGA GGGTGAGATC
GTTTGGCAGG CGACGTATCG TTCGTGGGGG GCGATTGAGA GCCTTGCTGT TAATGAGATT
GAGCAAAATC TGCGATTCCA AGGTCAGTAT TTTGATTACG ACACAGGACT TCATTACAAC
ACGTTACGGT ACTATGACCC TGAAGTTGGT AAGTTTTTAA CGCAAGATCC AATCGGTTTA
TATGGTGGCT GGAACCTTTA TGAGTATACA GTCAATCCAT TCACCTGGGT GGATCCCTTG
GGCCTCTGCG CCGATACTGT CAAGTGGGGT AATCACTCTG AAGCATTGGT GGAGGTGAAC
CCACTAAAGG AATGGTCAGG CCGCATGCCC ATCACATTGT GTTCAAGAAT GGTAAAAGCA
AAGAGATGCG AGCTATTCTT GATAAGAGTA AGGAAATTCT GGAAAGACAT GATATTGATT
GGTACAAGGG TAAAGAGAAC TTGGTTTGGG CGCCCAATAC TGGGCACTCA ACTGCCAACG
CGAGAAAAGT ATACGAGGCT TTGGCTAAGG CCGATGCCGG TGGCGCAGGG TCCAGAGATA
GCGTAG
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| Protein sequence | MLAKVNRDAG QAFEYDDADR VLNIQRLPTS TGKQLGITDE NLSDRYELLG RLTQELTPSG
VVDYKYEARS NLITLILPDG RKVNHLYYGS GHLHQLNLDG QVISDMERDD LHREVYRTQG
KLTSCFGYDA MGRKAWQFAS TLPAEKLSQV QNPGINTSLL VEHAYNPIHR RYQYDPAGEL
VRTLDKLRGE IKYEYEANGQ LHSRDTGSLV GSEEFRYDPA ANRLDFNARQ FEKVKDNRIK
RWRDQEYRYD PWGNLIEKRS GHSKLQNFAY DCENRLVRAE TLVNGKLEST GAYRYDSLGR
RIAKTAEIGG TSEQKRFLWQ GLRMLREETP GQSILYFYEP GSYAPLARVD QAEGQEQKVY
YFHTDQIGTP LEMSNSEGEI VWQATYRSWG AIESLAVNEI EQNLRFQGQY FDYDTGLHYN
TLRYYDPEVG KFLTQDPIGL YGGWNLYEYT VNPFTWVDPL GLCADTVKWG NHSEALVEVN
PLKEWSGRMP ITLCSRMVKA KRCELFLIRV RKFWKDMILI GTRVKRTWFG RPILGTQLPT
REKYTRLWLR PMPVAQGPEI A
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