| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2520 |
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| Symbol | |
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| ID | 6111473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 2801626 |
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| End bp | 2805861 |
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| Gene Length | 4236 bp |
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| Protein Length | 1411 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641622315 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001749389 |
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| Protein GI | 170721701 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0521301 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.492732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAAG CAGCGCGGTG GGGTGATGAG ATCGAACACA CTGGCGCCCT GGCTGGGTTT
CTTGCCGGTG CGGTAATTGG GCTGGCGATC GCGACGGCCG CAGCCTTCAC GATTTGCACG
GCTGGCCTTG GCGGTTTTTT GCTGGGCGCG GCTATTGGCC TGGGCGCAGG CCTGCTGCCA
ATGCTGGGGG AGAAATTCGG GTCAATGTTC AGCTCACCGG CTGGGCAGAT CGAGTTAGCC
GGGTGTTCGA CCAACGTTTT CATCAACAAT CGCAATGCTG CTCATGCTGA ACTGAGCACT
GCTAAATGCG ACAAGCATCC ACCTCCGGTG CTGGTGGCTG AAGGGTCTTC GAATGTCTTC
ATCAACGGTG TAGCGGCGTC GCGCAAAGGC GACAAGCTCA CCTGCGGGGC AAAGATCTCC
GGCGGCTCGA ACAACGTCTT CATCGGCGGT GGTACCCAGC GCTATCTGCC GGTAGACGAA
GAAATCCCGG AATGGCTGCG TGTCACCGTC GATGTGCTGA TGATCGCGGC TTCAATGGGC
CGGTCGATAC TCGCGGTTGG CCGTTTGGGG TTACAGGCAG GCCTCAAGGC TGCCGGCCCC
TGTGCCTTGC AGACGGGCGC GACGATCGCA GGCAGCTACC TTGCCGGGCG CTTCATCGTT
GGCCCGGCCA TAGAACGTGC GATCGGCGGT TTCGCCGGTA ATCCTGTAGA TATGACGACT
GGCCGCAAAT TGCTGGCCAA TGAAACGGAT TTCGTCCTGC CAGGGATGAT GCCAATCGAG
TGGTCACGCT TCTACGCCAG CGACCTGGCT ATCGACAGCG TGCTGGGCCA AGGCTGGGTG
CTGCCTTGGG AGCAAAGCCT GCGCCGTAGC GGCGGCTTCG TGTATCACGC CGACAACCAG
GGGCGCAGCG TTCCGTTCAT TGACCTTGAG CCGGGCGAAA GCATCTACAA CCCGAACGAG
AAAATCCATC TGGTCCGCAC CGTAGGCGGC CACTACCTGC TGCAGACCCT GGACAATGTG
TTCTTCTATT TCGGTGAGGT ACCGGACGAC AACACCGCCG TACCGCTGTA CCGCCTGGAA
AATGCGCTGG GTCACTACCT GCATTTCACC CGTGATGCCG ATCAGCGCCT GACCGATATC
AGCGCGCCCG GCAGTGTGCG GGTGCACCTG CATTACGAGC ACCCCCTCGG TCGCCTGACC
GAAGTCAAAC GCATCGTCGA CCAGCAAGCC GTGGAAACCC TGGTGCGCTA CCGCTATGAC
GACAGCGGCC AACTGACTGA AGTCATCAAC CGTAACGGTG ATTCGGTCCG ACAGTTCCAT
TACGCCGAAG GCCTGATGGT TCGCCACAGC AATGCCCTTG GCCTGATCTG CGAATACCGG
TGGCAAACCC AGAACGACAA ACCCCGCGTT GTCGAACACT GGACCAGTGA CGGCGAGCAT
TACCATTTCC GCTACGACTT CGCCCAGCGC ACGAGCTGGG CAACCGATGT GCTGGGCCGA
GAGCTGGAGA TTCACTACAA CGAAGACCAC CGCGTCGTCG CCAGCCGCGA CTTTGGCGGC
GAGCGCTACG GCATGGAGTT CGATGCGTTC GGCAACATCA TTGGCTTCAC CTTGCCGGAC
GGCAATCGCC TTGGGCTCAA GTACGATGAC TTTGGCAGGC TCGTCGAGGA AACCGATCCA
CTGGGCCGCA AGATCAGCTA CAAACACCAC CTCGCCACGC CACTGGTAAC TGAAACCCGC
TTCCCCGATG GCAGCATCTG GAAGTCTCGT TACGACGGCA AGGGCAATCT GATTGCCGAG
ATCGACCCAC TTGGCCACAA GACCGAGTAC CTCAACGGTG AGGATGGCCT GCCGCACACG
ATCATCGATG CGAACTTCAA GTCCAAGTAC TTGTGGTGGA ACACCTACGC CCAGGTCGAG
CGCTTTGAAG ACTGCTCGGG CAAGAGCACG TATTACCGCT ACGACGAGCG TCAGCACCTG
ATAGCCGTCA CCGACGCGCT GAACCAGACC ACCACGCTGG AGCGCAAGCC GGATGGTGAA
GTGCTGCGCA TCCACCACCC GGACGGTACA GCAGAGAGCT TCACCTACAA CACCCTTGGC
CAAGTGCTCA CCCACACCGA CGGCAAAGGC CAGACCACAC GGCTGCAGCG TACGTCGCGC
GGTTTGCCCA GCAGCCGCCA GGATGCCAAA GGGCAGTGGG TTCGCTACGA GTACGACAAA
GCGCTGCGCC TGACCGCCCT GGTCAACGAG AACAGCGCAG CCTACCGCTT TGCCTATGAC
GCCTCGGACC GCCTGAGTGA AGAAGTGCGG GTGGACAACC TGACCCGGCG CTTCAGTTAT
GACGCTGGCG GCAATCTGGT TCGCCTGGAC GAAATCGGCT ATGGCGAAAA CGGCGAGCGC
CCGGAGCGCG ATACCGTATT TGAGCGCGAT GCGATTGGCC GCTTGCTGGC CAAGGTCAAC
CGCGATGCAC GCCAGGATTT CGAGTACGAC GAGGCCGACC GGCTGCTGAG CATTCAGCGC
ACGCCGAGCA GTTTGGGCAA ACAGTTGGGC ATCACGGGTG AAAAGCTGAG TTACCGCTAC
GACCTGCTGG GACGCTTGAC GCAGGAACTG ACCCCAAGCG GAGCACTGGA TTATGAGTAC
GACCCGCTGA GCAACCTGAC CACACTGACC CTGCCAGACG GGCGCAAGGT CAACCACCTG
TACTACGGCA GCGGCCATCT GCACCAGCTG AACCTGGACG GCCAGGTCAT CAGCGACATG
GAACGCGATG ACCTGCACCG CGAGGTGTAC CGCACGCAGG GCAAGCTCAC CAGTTGCTTT
GGGTACGACG CCATGGGGCG CAAGGCTTGG CAGTTTGCTT CGACCCTGCC GGCTGAAAAG
CTGTCGCAAG TGCAGAACCC CGGCATCAAC ACCTCACTGC TGGTGGAGCA CGCTTACAAC
CCGATTCACC GTCGCTACCA GTACGACCCG GCGGGCGAAT TGGTACGCAC GCTGGACAAG
CTGCGCGGCG AGATCAAGTA CGAGTACGAA GCCAACGGCC AGTTGCACAG CCGCGATACT
GGTTCCCTCG TAGGCAGCGA AGAGTTCCGC TATGACCCGG CGGCCAACAG GCTCGACTTC
AACGCTCGGC AGTTTGAGAA GGTGAAGGAC AACCGCATCA AGCGTTGGCG CGATCAGGAG
TACCGCTACG ATCCGTGGGG CAATTTGATT GAGAAGCGCT CGGGGCACAG CAAGTTGCAG
AGCTTCAGCT ATGACTGCGA GAACCGGCTG GTTCGGGCGG AGACGCTGGT CAACGGCAAG
CTGGAAAGTA CGGGCGCTTA TCGCTATGAC AGCCTGGGGC GGCGGATTGC CAAGCAGTCG
GAGATTAACG GCACCACGGA GCAGAAGCGT TTTCTGTGGC AAGGGCTAAG GATGTTGCGT
GAGGAGACGC CGGGGCAGAG CATTCTGTAT CTCTATGAGC CGGGTAGCTA TGCGCCGTTG
GCGCGGGTGG ATCAGGCGGA AGGGGATGAG CAGAAGATCT ACTATTTCCA TACTGACCAG
ATTGGTACGC CGCTGGAGCT GACTGATAGC GAGGGTAAGA TTGTTTGGCA GGCGACGTAT
CGTTCGTGGG GCGCGATTGA GCAGCTAACG GTCAACGAGA TTGACCAAAA TTTACGGTTC
CAGGGCCAGT ACTTTGATCG CGAGACGTCG CTTCATTACA ATACGCTAAG ATATTACGAC
CCTGACGTTG GTAGATTCAT TGGTCCAGAT CCCATTGGCT TGCGCGGCGG TGTAAATCTT
TTTAGATACA ATGTAAATCC GATTTATTGG ATTGATCCAA CGGGGCTCGC CCCATGTCAA
GTGCGAGTTG TTAATAACAC AAAGATTCAT GGTCGTGGAC AGGTAGACGG AACCCCTGGG
CATGATCAGT TTTCAGAAGC GATCGCTAAT AAATTGGCTA TGAGCGGAAG GTTCTCGGAT
GTGTACTTAA ATCGTTCATA TAGCTTCGCA AATGGGCGAG GCGTCTCAGC TCGACGTCCA
GATGTCATGG CTGTTGATGT GAACGGAAAG GTCCATGCGA TCGAACTTGC CTCTAAGACG
GATATGGGCA GAAAGCTTCC CACGCTTACT ACGCGTAATG AAACTGCAAT GAGTAATTTA
CCTCTTAGTA AGCAAGGCGA GGTTTTGGTG TTAGAGCATC CATATAGTGC TTCTGACATG
AAGTCTTTGC TTGATGATTT GATTTCTGGA ATATAG
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| Protein sequence | MFEAARWGDE IEHTGALAGF LAGAVIGLAI ATAAAFTICT AGLGGFLLGA AIGLGAGLLP
MLGEKFGSMF SSPAGQIELA GCSTNVFINN RNAAHAELST AKCDKHPPPV LVAEGSSNVF
INGVAASRKG DKLTCGAKIS GGSNNVFIGG GTQRYLPVDE EIPEWLRVTV DVLMIAASMG
RSILAVGRLG LQAGLKAAGP CALQTGATIA GSYLAGRFIV GPAIERAIGG FAGNPVDMTT
GRKLLANETD FVLPGMMPIE WSRFYASDLA IDSVLGQGWV LPWEQSLRRS GGFVYHADNQ
GRSVPFIDLE PGESIYNPNE KIHLVRTVGG HYLLQTLDNV FFYFGEVPDD NTAVPLYRLE
NALGHYLHFT RDADQRLTDI SAPGSVRVHL HYEHPLGRLT EVKRIVDQQA VETLVRYRYD
DSGQLTEVIN RNGDSVRQFH YAEGLMVRHS NALGLICEYR WQTQNDKPRV VEHWTSDGEH
YHFRYDFAQR TSWATDVLGR ELEIHYNEDH RVVASRDFGG ERYGMEFDAF GNIIGFTLPD
GNRLGLKYDD FGRLVEETDP LGRKISYKHH LATPLVTETR FPDGSIWKSR YDGKGNLIAE
IDPLGHKTEY LNGEDGLPHT IIDANFKSKY LWWNTYAQVE RFEDCSGKST YYRYDERQHL
IAVTDALNQT TTLERKPDGE VLRIHHPDGT AESFTYNTLG QVLTHTDGKG QTTRLQRTSR
GLPSSRQDAK GQWVRYEYDK ALRLTALVNE NSAAYRFAYD ASDRLSEEVR VDNLTRRFSY
DAGGNLVRLD EIGYGENGER PERDTVFERD AIGRLLAKVN RDARQDFEYD EADRLLSIQR
TPSSLGKQLG ITGEKLSYRY DLLGRLTQEL TPSGALDYEY DPLSNLTTLT LPDGRKVNHL
YYGSGHLHQL NLDGQVISDM ERDDLHREVY RTQGKLTSCF GYDAMGRKAW QFASTLPAEK
LSQVQNPGIN TSLLVEHAYN PIHRRYQYDP AGELVRTLDK LRGEIKYEYE ANGQLHSRDT
GSLVGSEEFR YDPAANRLDF NARQFEKVKD NRIKRWRDQE YRYDPWGNLI EKRSGHSKLQ
SFSYDCENRL VRAETLVNGK LESTGAYRYD SLGRRIAKQS EINGTTEQKR FLWQGLRMLR
EETPGQSILY LYEPGSYAPL ARVDQAEGDE QKIYYFHTDQ IGTPLELTDS EGKIVWQATY
RSWGAIEQLT VNEIDQNLRF QGQYFDRETS LHYNTLRYYD PDVGRFIGPD PIGLRGGVNL
FRYNVNPIYW IDPTGLAPCQ VRVVNNTKIH GRGQVDGTPG HDQFSEAIAN KLAMSGRFSD
VYLNRSYSFA NGRGVSARRP DVMAVDVNGK VHAIELASKT DMGRKLPTLT TRNETAMSNL
PLSKQGEVLV LEHPYSASDM KSLLDDLISG I
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