| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2501 |
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| Symbol | |
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| ID | 6111454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 2777487 |
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| End bp | 2781293 |
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| Gene Length | 3807 bp |
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| Protein Length | 1268 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641622296 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001749370 |
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| Protein GI | 170721682 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.761474 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAT TACTGCGTCT GTTGAAGAGT TTCTGGATTC TCCTGCCACT GCTGTGGTTG
GTGACCCTGT TGATCTGCTG GCTGGTGGCA CCGATGGTGC CCTGGCTGCG CCACCATGTG
CCCGAAGCGC TGGCCATCAT CAGCGCCTGC TTCCTGCTGG TGATCGTGCT GCGCCAGTAC
CAGCGCATCC GCGCCGAGCA TAACCTGGAG AACCTGCTGC AGATCGAGGT CGATCGCTCG
TGGAACGCCA CCGGTGAATT CCGCGACCAG CAAGTGCTGC GCGAGCGCCT CAAGCATGCC
ATCGCCATGC TGCGCACCGA CCGCTCCGCC GGTGGCGGTG GCAAGGCGGC CCTGTCCGAC
CTGCCCTGGT ACCTGGTGAT CGGCATGTCG GCTGCAGGCA AAACCTCGCT GTTGACCCAC
TCGGGCCTCT CGGCCAGCAT CGCCACCGCC AATGACAGCG AAAGTGGCAC CCAGCACTGT
GACTGGTATT TCAGCCCCGA CGCAGTGATG ATCGACACCG CAGGCCGTTA CCTGCGCGAC
GATCAGTCTG CCAGCGAGTT TTCAGCCTTC CTGCGCATGC TGCGCAAGCA ACGCGGCAAG
GCAGCGATCA ACGGCCTGGT GCTGGTGGTC AGCCTGCCTG AACTGTTGGC GGCCAACAGC
GACGGCCGTA ACGCGCTTGC CGCGCAGTTG GTGGCGCGCG TGGAGGAATA CGCCGAGTGC
CTGGGCACCA ACCCGCCTGT GTACCTGATG CTGAGCAAGA CCGACCAGTT GCCCGGCTTC
AACCAGGCCT TCGAAGGCCT GGACCTGCAC CAGCGCCAGC AGCCGCTGGG CATGACCTTT
GGCCTGTCGG AAATCCGCAA CAACGGTTTG CAGGCGGTGC TCAACACTCG CCTGAAAAAC
CTGCAAAGCC ACATCCGCCG CCACGTCGAT GCGCAGATGA TCAGCCTCGG CGCAGATGCC
GACAGCACAC TGCTCAACTT CCCCCAGTAC TTCGCAGAAC TCAATGGCGT GCTGGAGCAG
TTCCTTGAGC ACTTCACCCG CGGCCAGGGT GGCGGTGCCC CGCTGCTGTT GCGCGGCTTG
TACTTCACCA GTGCGCTGCA GACCGAGCAG CAACTGGGCC AGGTGTACGA TGACGTCATC
GCCGACAACT TTGCCCTGCA AGCGGCCCAC GATGAAGGCG CCCAGCCGGC CAGCCACACG
CAGGGCAACC GCAGCTACTT CATCACCGAC ACATTCCGCC AGGTGATTTT CCCCGACCGC
GACCTGACCC TGTACCAGTC GCGCCTGGGC CGCAAGGCAG GCTTCAGCCC CCTGTTGCTG
GGCCTGGCCG CTGCCGCCGG GGTGGCCTTT ATCGGCTGGC AGGCGCTATC GTTCGCCAAC
AACCGCCAGT GGCTGGACAG CCTGCGTGGC CAACTGGCCG AAATCGAACG CGCCGATGAC
CGCGCACAGC TGTTGGCTGC CGGTAAAGGC CTGGAAGTGC TACGCGGGCA GATGGCCACG
GTCGAGGCCC ATCGCCAGCA GGGTGTCCCG CTGCAATTGA GCGCCGGCCT GTACCACGGC
GAGGCTATTC ACCAGGTGGC CCGCGACGCC TACCTGGCGC AACTGCGCAG CCAGGCACTG
GAGCCGATTG CCCGCAGCCT GCAGGTGCAG ATGCGTGCGT TCAACACCTT TGCCAGCGGC
ATCAACCAGG AGCTGGAGTT CACCCCGGCG CCGAAAAGCC GCAATGGCAA ACCGTTGACG
CCTCGCCTGG CGGCCAAGGC CCAAGCGGCC CTGACCAAAA CCCGTGCCGG CGCCTACGCC
GCCAAGGTCA ACCTGGCCAC GGCCAGCGAC GCGGCCGAAT TGTCCGCCAC CACCGGCGGC
CTGTCACTGT CAGAAGAGAT GCTCGGACGC CTGGACGAAC AGCAGGTGGC GTCGATCATC
GAGGCCTATA ACACCCTCAA GCTGTACCTG CTGTTGACCG AGCCACAAGC CCACCCGGAC
CCAGCCTTCG TCGCTGCCAG CCTGCCGCAG GCCTGGGCAG GCGCCGCAAC CCAAGGTTCC
CCCGCCGACG CAGCCGTCAT CAGCGAAAAC GCCCCTCTGT ACGTTCAATT GCTGGAGCAA
GGCCAGGCGC CGTCGCTGCC GCGTAACCAA CAGCTGATCG ACGAAACCCG GCAGAACCTC
AAGGCATTCA TGATTTCCAG CTCGCTGGTG GATCGCGAAT ACCTGCGCCT GCAACTGGAG
TCCAGCCGCC AGTTCCCGGC GCTGAGCCTC AACGACCTGG TGCCAACGCC TGGCCGTAAC
CTGTTGTACA GCTCTGCCGG CGTGCCGGCG ATCTATACCC GCCAGGGCTG GGACACCTTC
GTCAAGCCCG AGCTGATCAA GCTGGTTTCG GGCAACCTGC GCAACGAGTC GGACTGGGTG
CTCGACGGCG AAGGCGGCGA TGCCATCGTG CAGAAAGCCA ACTTCGTGCG CGAGTTCATG
GCCCGCTACA AACGCGATTA CACCCAGGCC TGGTACAAGA TGGTCAGCAG CGTGGGCGTG
CGCCACTTCG CCGACCTGGC CTCGGCCACA GAACACCTTG GGCTGCTCAG CGATGTGCAG
AACTCGCCGG TGAAGAACCT GCTGGCAGCG GTCAATGACA ACACTCAGTG GGACTTGCCG
GTCAAGCGCG ACACCACGCC TACGGGCAAT GCCCGCGCGG ACGGCTTCTG GAGCAAGGTA
ACCGGCCTGA TCGACGAAGC CAAAGACGTG GCGCCTGAAG CCCTGGCCCC TAGCCTGCCG
GCCGTGGACG ACGGCAGCCT GGCCAAGCGT TTCGAGCCGG TCGCCCGGGT GTTCGCAGCC
AACAACGCCG AAGGCGCCGA CAGCACCATC ATGGACCGCT ACCTGGCCGC GCTGCGCAAG
CTCAAGGTGC GCATGAACAA CATCCAGCGC TCGCAGGATG TCGGTAAAAG CAGCAAGCAG
CTGATCAGCG AAACTCTGGA AGGCCAGCCG AGCGAGGTGA CCACCGTGCG CAACTACGTG
GAAACCAGCG TCGACACCAG CCAGGACGGC CTGTCGCGTT CGCTGCAGGG CCTGTTCAGC
CTGCCGATCC AGTACGCCTG GGAAACCCTG CGCGACCCGG CCGGCCAACA GATCGCCAAA
GCCTGGAAGC AGCAGATCGC CAAGCCCTGG GAGCAGGTCA TGGCGCACCG TTACCCGATC
GCCACCGGCA GCCGCAACGA AGCTTCGGTC AAGGACCTGC AGCGTTTCGT CGACCCCGAA
AGCGGCCTGC TGCCGACCTT CAAGCGCAAC GAGATCGGCA ACCTGTCCGG CGGTGAAGGG
CTGGGCCTGA GCAACGGCAA GGCGCCGGCG CTGGTCAACC CGGGGATGCT CAACAGCATC
GACAAGGCCA GCAACGTGGG TCAGGTGATC GCCAGCCTGT CGGACCGCGA CAACGGCTTC
GAGATCATGC TTGAGCCGTC GGCCAACTTT ACCGACATTG TGTTCACCCT TGATGGCCAG
GAGCAGCACT ACCGCAACGG CCGCAGCAGC TGGAGCCGCT TTGCCTGGCC AGGCACCAAC
AACACGCCGG GCGCACGCCT GGACGTGGTC ACCCTCAGCG GTGCACGCAT CACCGTGTTC
GACTTCCCGG GGCGGTGGGG CCTGCTGCGC ATGAACGAAA GCGCCCGGGT CGACGACCTG
GACGGCATCC AGCAGCGCTT CAGCTGGAAC ACGGCCAATG GCCGGGTCAG CCTGGTGGTG
CGCAACTTCG GCGGGGTCAA ACTCACCGAC CTGGGCGACG TCAAGGCGCT GAGCGCCCTC
AACGACGCTG GCAGGGGCGC ACAATGA
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| Protein sequence | MKTLLRLLKS FWILLPLLWL VTLLICWLVA PMVPWLRHHV PEALAIISAC FLLVIVLRQY
QRIRAEHNLE NLLQIEVDRS WNATGEFRDQ QVLRERLKHA IAMLRTDRSA GGGGKAALSD
LPWYLVIGMS AAGKTSLLTH SGLSASIATA NDSESGTQHC DWYFSPDAVM IDTAGRYLRD
DQSASEFSAF LRMLRKQRGK AAINGLVLVV SLPELLAANS DGRNALAAQL VARVEEYAEC
LGTNPPVYLM LSKTDQLPGF NQAFEGLDLH QRQQPLGMTF GLSEIRNNGL QAVLNTRLKN
LQSHIRRHVD AQMISLGADA DSTLLNFPQY FAELNGVLEQ FLEHFTRGQG GGAPLLLRGL
YFTSALQTEQ QLGQVYDDVI ADNFALQAAH DEGAQPASHT QGNRSYFITD TFRQVIFPDR
DLTLYQSRLG RKAGFSPLLL GLAAAAGVAF IGWQALSFAN NRQWLDSLRG QLAEIERADD
RAQLLAAGKG LEVLRGQMAT VEAHRQQGVP LQLSAGLYHG EAIHQVARDA YLAQLRSQAL
EPIARSLQVQ MRAFNTFASG INQELEFTPA PKSRNGKPLT PRLAAKAQAA LTKTRAGAYA
AKVNLATASD AAELSATTGG LSLSEEMLGR LDEQQVASII EAYNTLKLYL LLTEPQAHPD
PAFVAASLPQ AWAGAATQGS PADAAVISEN APLYVQLLEQ GQAPSLPRNQ QLIDETRQNL
KAFMISSSLV DREYLRLQLE SSRQFPALSL NDLVPTPGRN LLYSSAGVPA IYTRQGWDTF
VKPELIKLVS GNLRNESDWV LDGEGGDAIV QKANFVREFM ARYKRDYTQA WYKMVSSVGV
RHFADLASAT EHLGLLSDVQ NSPVKNLLAA VNDNTQWDLP VKRDTTPTGN ARADGFWSKV
TGLIDEAKDV APEALAPSLP AVDDGSLAKR FEPVARVFAA NNAEGADSTI MDRYLAALRK
LKVRMNNIQR SQDVGKSSKQ LISETLEGQP SEVTTVRNYV ETSVDTSQDG LSRSLQGLFS
LPIQYAWETL RDPAGQQIAK AWKQQIAKPW EQVMAHRYPI ATGSRNEASV KDLQRFVDPE
SGLLPTFKRN EIGNLSGGEG LGLSNGKAPA LVNPGMLNSI DKASNVGQVI ASLSDRDNGF
EIMLEPSANF TDIVFTLDGQ EQHYRNGRSS WSRFAWPGTN NTPGARLDVV TLSGARITVF
DFPGRWGLLR MNESARVDDL DGIQQRFSWN TANGRVSLVV RNFGGVKLTD LGDVKALSAL
NDAGRGAQ
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