| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2498 |
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| Symbol | |
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| ID | 6111451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 2773428 |
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| End bp | 2773946 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641622293 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001749367 |
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| Protein GI | 170721679 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.575217 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.972147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTTG ACGCGTATAT CCAAATCGAC GGCATCCCGG GCGAAGTTCT GGATGAAAAA
CACAAGGACT GGATCGAAGT GCTGGGCTAC GAGTACGGCG CCACCCAGGC CACTTCGGCC
ACTGCCAGCT CCTCGGGCGG TGCATCCTCC GAGCGCGTGT CGCTGACCGA CTTCAAGATC
CGCAAGGCAG TCGACAAGGC CTCGGCCAAA CTGTTCGAGC ACTGCTGCAC CGGCAAGCAC
ATCGCCAAGC TGAAGCTGAA CGTCAACCGT GCCGGTGGTG ACAAGGTCAC CTACCTGACC
ATCGACATGG AAGAAGTGGT GGTGTCCTCG GTCAAGTTCG TCGCCGGTGG CAACCAGGGC
GGTGAAGACA AGGCGGTAAG CGACCTGCCG ATTGAAGAAA TCAGCTTCAA CTTCGCCCGC
ATCAAAACCA CCTACACCCA GCAGAACCGT ACCGACGGCC AGGCTGGCGG CAACATCGTC
GGTGGCTGGG ACCGCACCGC GAACAAAGTG TTTGCCTAA
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| Protein sequence | MAFDAYIQID GIPGEVLDEK HKDWIEVLGY EYGATQATSA TASSSGGASS ERVSLTDFKI
RKAVDKASAK LFEHCCTGKH IAKLKLNVNR AGGDKVTYLT IDMEEVVVSS VKFVAGGNQG
GEDKAVSDLP IEEISFNFAR IKTTYTQQNR TDGQAGGNIV GGWDRTANKV FA
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