| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2438 |
|---|
| Symbol | |
|---|
| ID | 6111391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 2707594 |
|---|
| End bp | 2709180 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641622233 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_001749307 |
|---|
| Protein GI | 170721619 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTGC GCAGTAAAAG TCCCGCCCGC TGGAGCTGGC GCACCCTCCT CCCTTGGGGC
GTTGGCATCT TGCCCCTGGC GTTCGGCCTG ATCGTGATGA ACTGGCAAAT CGAGCGCGAA
CTGCGCGCCA GCAGCCAGGC TACCGCGCGA CAAGTGGTCG AGCAGGTCGA GCGCATACTG
GACAGCATCT CCGGTGCCGC CCAGACCCTG CTGCCGCTAG CTGGCAGCCC ATGCGGGCAA
GTCGAACTGG CCTTGCGTGG ACAGGTGACG CGCAACGCCT ATGTACGCTC GACCAACCTG
TTCCGGCAGG ACACACTGTA TTGCACCTCT CTGTTCGGCG AGTTCGACGA GCCGGTAGAT
GCCCGCGACT ACACCGATGG CACGCTGTGG CTGATGGACG GCAACTCGGT CACACCCGGG
CACCCACTGC TGGTGTATCG GGCCAGTGAC GGCGACAGAG GCGCGATCAC CACAGTAGAT
GGCGACCATT TACTGACTGC ATTACGCCTT ATGGGCCCCG ATGAGGCGCT GCAATTGCGC
GTCGGTACGG CGTGGATGGG CAAGGACGGC GTGGTGCATC AAGGCCAGCC GCCCACCGCC
CCCATTGGCG ACGTGACACT CGGATCGACG CACTACCCCT TCAGCGTTCA CGGTGGTTAT
GCCGCCGACA AGCGGGGCGA AGTGCTGCGC AGCCGCTACC CGGCATTGCT CAGCTTGCTG
CTGTTGCTCG GTGTTGCAGC CGGTTGCACT TGTCGCTGGC AAATCCGCCG CGCCAACTCT
CCACGCGCCG AACTGCGCCG TGCGCTGGAA GCTGACGAGT TCCTGCCGTA CTTCCAGCCG
GTGGTGCGCA AAGGCGATTA TCGCTGGGCT GGCGCCGAAG TGCTGATGCG CTGGAACCAC
CCGCACGAGG GCCTGGTGCG CCCCGATCTG TTCATTCCCT ATGCCGAACA CAGCGGCCAG
ATCGTCGACA TGACCCGTGC GTTGATGCAG CACACTGCGC AAAGCCTGGC GCCGTACGCT
GCATTGCTGG AAGACGGCTT CCACATTGGC ATCAACATTA CGGCCGACCA CTGCCATGAC
CTGGCCCTGA TCGACGACTG CCGCACGTTC CTCGAGCACT TCCCCCCCGG GCGGGTGGTG
CTGACGCTGG AGCTGACTGA GCGCAAACTG ATCGAGGCCA CCGGGGTAAC GCTGGAATTG
TTCGACAAAC TCCACGAAAT GGGTGTGATG ATCGCACTGG ACGATTTCGG CACCGGCCAG
TCCAGCCTCA ACTATCTGCG TCAGTTCAAA ATCGACTACC TGAAAATCGA TCAGAGCTTT
GTGGCAATGA TCGGAGGCGA TGCGCTGTCG CAGCACATCC TTGACAGCAT CATCGAGCTG
TCGGCAAAGC TGGGCCTGGG CATCGTCGCC GAAGGCGTGG AAACCGAAGT GCAGCGCGAG
TATCTGGCCC GGTATGACGT GGACTTTCAG CAGGGCTATC TGTTCGCCAG ACCAATGCCG
GCAGCGCAAT TTCTCCAGGC GCTGGCCACG CGACCGGGCG TTACGCGGTT GCCGCATGAC
GCGGCCCCTG AGATCATGCG CGGCTGA
|
|---|
| Protein sequence | MPLRSKSPAR WSWRTLLPWG VGILPLAFGL IVMNWQIERE LRASSQATAR QVVEQVERIL
DSISGAAQTL LPLAGSPCGQ VELALRGQVT RNAYVRSTNL FRQDTLYCTS LFGEFDEPVD
ARDYTDGTLW LMDGNSVTPG HPLLVYRASD GDRGAITTVD GDHLLTALRL MGPDEALQLR
VGTAWMGKDG VVHQGQPPTA PIGDVTLGST HYPFSVHGGY AADKRGEVLR SRYPALLSLL
LLLGVAAGCT CRWQIRRANS PRAELRRALE ADEFLPYFQP VVRKGDYRWA GAEVLMRWNH
PHEGLVRPDL FIPYAEHSGQ IVDMTRALMQ HTAQSLAPYA ALLEDGFHIG INITADHCHD
LALIDDCRTF LEHFPPGRVV LTLELTERKL IEATGVTLEL FDKLHEMGVM IALDDFGTGQ
SSLNYLRQFK IDYLKIDQSF VAMIGGDALS QHILDSIIEL SAKLGLGIVA EGVETEVQRE
YLARYDVDFQ QGYLFARPMP AAQFLQALAT RPGVTRLPHD AAPEIMRG
|
|---|
| |