| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2231 |
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| Symbol | |
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| ID | 6111184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 2479167 |
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| End bp | 2481266 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641622026 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001749100 |
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| Protein GI | 170721412 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTAG TCGCAAGCCC CGACGTCATG TACCGGCTGT TGATCCAGAG CGTGGTGGAC
TATGCCATCT ACCTGCTCAC CCCCGACGGT ATCGTCGCCA ACTGGAACCC GGGCGCCCAG
CGGGCCAAGG GTTACCTTGC CGACGAGATT ATCGGCAAGC ACTACTCGCT GTTCTACAGC
GAAGCCGAGC GCGTCGCCGG CCTGCCCGAG CAGAACCTTG CGCAGGCGCG CGACACTGGC
CGCTTCGAAG AAATCGGCGC ACGCCTGCGC AAGGACGGCT CGACCTTTCA TGCCCACGTG
GTGATCGAGG CGGTGCGCGA TGACAACGGC CATCTGATCG GCTTCGCCAA GGTCACCCGT
GACATTTCCG AGCGGCGCCA ACAGGAACTG GAATTGTTGC AGGCCAAGGA GCTGGCTGAA
CAGTACAGCC AGGAGATGAC CAAGCTTTCG CAGTTCCTTG ATTCTGTGAT CGCCAACATT
CCCGCCAGCG TTATCGTCCA GGACCTGGAA AGCCAGCGTA TCCTGCTGGC CAACCAGCAG
GCCGAACGCC TGTTCGGTGG GCGCGGCCGC AGCATGATCG GCCGGTTGCC GGGTGAGTGC
CTGGCACCGG CTGCGGCCGA TTACCTGGAA CAGCAACTCG CCCGCGGCGC ACGCAACCCA
AAGGGTTATG CCGCTGAAAC CTGCGTCGAT ACCGCCTGTG GTCCGCGGAC CCTGCGCAGC
CGCGCATTGC TCAGCCAGAA CCGCGAGGGC CAGGCCGACT ATGTGCTGTT CGTGGCAGAA
GACGCCACCG AGGAACTGGC CGCCCACGCC CAGATCCATC ACATGGCGCA CCACGACGCG
CTGACCGGGT TGCCCAACCG CACACTGTTC AACGAGCGGC TCAAGCAGGC ACTGGTGCGC
GGCCATCAGA ACGACAAGCT GACCGCAGCG CTGTGCCTGG ACCTGGACAA CTTCAAGAAC
ATCAACGATT CCCTCGGCCA TGCCTTCGGC GACAAGCTGC TGCGCGCACT GGGCAAGCGC
CTGCGCCGTG AGCTGCGCGA GCAAGACACC CTGGCCCGCT TGGGCGGCGA TGAGTTCGCC
GTGGTGCTGA CTGGCCTGGA CGGCCGCGAG GCTGCCTGCA ATACGGCGAA GCGCCTGATT
GAAGCGATTT GCCCGCCGTT CCAGATCGAA GGCCACCAGT TCACGGTGGG CGTGAGCATC
GGCATCGCCA TTGCCCCCGA TGACAATGAA CAGGCCGAAC AGCTGCTCGG TTACGCCGAT
ATGGCCCTCT ACGAAGCCAA GCGCAATGGG CGTAACCGCT ACGAGTGCTT CCACGTCGAA
CTGGATGTCG CCGCCCGCCA GCGCCGCCTG GTCGAAACAG ACCTGCGCAC TGCGCTGCAC
CTTGGGCAGT TGCACCTGCA TTACCAGCCG ATAGTGGATC AGCAGACCAG CAGCGTGACT
GGCTACGAGG CGCTGTTGCG CTGGGAGCAC CCGACCCGCG GCATGGTGAT GCCCATGGAC
TTCATTCCCA TTGCCGAGGA GACCGGGCTG ATCCACGAAC TCGGCACCCG TGCGCTGAAC
CTGGCGTGCC AGGAGGCGGC CAGTTGGGAC AGTGAGCAGA CGGTGTCGGT CAACCTGTCA
CCGGTGCAGT TCAAGAACGC CAACCTGGTC CATACCGTGG CCCTGGCCCT GGCCGACTCG
GGCCTGGCGC CCCAACGCCT GGAGCTGGAA ATCACCGAAT CGGTACTGCT GGGCAACAGC
GAGGAGAACG TGCGTACCTT GCGCGCCCTG AAAGACCTGG GGGTGTCGAT TTCGCTGGAT
GACTTCGGCA CCGGGTATTC GTCGCTCGGT TACCTGCGCT CGTTCCCGTT CGACCGGATC
AAGATCGACA AGTCGTTCGT GCATGACATG TGCGACAGCC GCGAGGCGAT GTCCATCGTC
CGGGCGATCA CCGAACTGTC CAACAGCCTG ATGATCAAGA CCACGGCTGA GGGTGTGGAG
TCCGAGGAGC AGATGCAGCG GCTGGCGGCG GAAGGGTGCT CGCACTTCCA GGGTTATCTG
TATGGGCGCC CGGTGCCGGC GGGGGAGCGG TTGAAGCAGG TGGCTGTGGC GGTGAGTTGA
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| Protein sequence | MSLVASPDVM YRLLIQSVVD YAIYLLTPDG IVANWNPGAQ RAKGYLADEI IGKHYSLFYS
EAERVAGLPE QNLAQARDTG RFEEIGARLR KDGSTFHAHV VIEAVRDDNG HLIGFAKVTR
DISERRQQEL ELLQAKELAE QYSQEMTKLS QFLDSVIANI PASVIVQDLE SQRILLANQQ
AERLFGGRGR SMIGRLPGEC LAPAAADYLE QQLARGARNP KGYAAETCVD TACGPRTLRS
RALLSQNREG QADYVLFVAE DATEELAAHA QIHHMAHHDA LTGLPNRTLF NERLKQALVR
GHQNDKLTAA LCLDLDNFKN INDSLGHAFG DKLLRALGKR LRRELREQDT LARLGGDEFA
VVLTGLDGRE AACNTAKRLI EAICPPFQIE GHQFTVGVSI GIAIAPDDNE QAEQLLGYAD
MALYEAKRNG RNRYECFHVE LDVAARQRRL VETDLRTALH LGQLHLHYQP IVDQQTSSVT
GYEALLRWEH PTRGMVMPMD FIPIAEETGL IHELGTRALN LACQEAASWD SEQTVSVNLS
PVQFKNANLV HTVALALADS GLAPQRLELE ITESVLLGNS EENVRTLRAL KDLGVSISLD
DFGTGYSSLG YLRSFPFDRI KIDKSFVHDM CDSREAMSIV RAITELSNSL MIKTTAEGVE
SEEQMQRLAA EGCSHFQGYL YGRPVPAGER LKQVAVAVS
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