| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2173 |
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| Symbol | |
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| ID | 6111126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 2421957 |
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| End bp | 2424194 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641621968 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001749042 |
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| Protein GI | 170721354 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATGC AAGCTCCTTC ACGCCATCCA TTCCCTACCC TGCGTGCGCC ATTGCTCGGC
CTGAGTGTCG CCATCGCCCT GGCCGGTTGC GCCACCACGC AACGTGACCT GCACACCGAC
CCGGCGCTGC TGCAACAAGC CTTCAGCGGC GCCGACGCCC CCGCCCCTGC GGCCACCGGC
CCCGAGCCCG CTGCCGCGCC CGCTGCAGCG GCCCCACGCA CCGCGCCTGG CCGGCAGATC
ATCACCGGCA ACCAGCGTTT CATCCGCAAG GCCTCGGCAA CGCCCCCCGC CGCGAAGGAT
GAGCAAGGCG ATATCGTGTT CAACTTCACC GACCAGCCCA TCGAGGCGGT GATCAACAGC
GTCATGGGCG ACCTGCTGCA TGAAAACTAC AGCATCAGCC AAGGTGTCAA AGGCAGCGTC
AGTTTCTCCA CCTCAAAGCC GGTCACCAAG CAGCAGGCAC TGTCGATCCT GGAAACGCTG
CTGTCGTGGA CCGACAATGC AATGATCCGC CAGGGCGAGC GCTATGTGAT CCTGCCGGCC
GACAAGGCCG TCGCCGGCAA ACTGGTGCCA CAGGTACCGG TCGCTCAGCC TGCCACGGGC
CTCGCCGCCC GGCTCTATCC GCTGCGCTAC ATCGGCGCCA GCGAAATGCA GAAGCTGCTC
AAGCCTTTCG TACGTGAGAA TGCCTTCCTG TTGGTCGACC CGGCCCGCAA CGTGATCAGC
CTGGCGGGCA CCCCCGATGA ACTGGCCAAC TACCAGGACA CCATCGACAC CTTCGACGTC
GACTGGCTCA AGGGCATGTC GATAGGCGTT TACGGCCTGC AACGCGCCTC GGTGGCCGAG
CTCATGCCGC AGCTGCAGAA GCTGTTCGGG CCCGACAGCG GCATGCCATT GTCGGACATG
GTCAGGTTCA TGCCCAACGA ACGCACCAAC TCGATCGTCG CCATCTCTGC GCAACCGGAG
TATCTGCAAG AAGTCGGCGA CTGGATCCGC ACCATCGATG AAGGCGGTGG CAACGAACCG
CAGCTTTTCG TGTACGACGT GCGCAACATG AAAGCGGCGG ACCTTGCCCG TTATCTGCGC
CAGATCTATG GCTCGGGGCA GATCAACGAC GACAAGGCGG CCAGCGTCGC GCCAGGGCTC
AAGACCACCA GTCTGACCTC GCTCAACGGC ACTGGCAGCC AGTCGGGCCA AGGCCTGAGC
GGCATGGGCA TGAACACCCA GGCCAGTATC CGCGAGGCAC CCTCGGAGGA TGACTATGAG
GATACTGGGC AACCCGAGGC CAGCAGCGCC GAGTCGGCCG ACGGCTCGGT CAAGAGCCTT
GAAGAGTCCG TGCGCATCAC CGCGCAGAAA AGCAGCAACC AGTTACTGGT ACGCACGCGG
CCTGCCCAGT GGAAAGAGAT CGAATCGGCC ATCAAGCGCC TGGACAGCCC GCCGCTGCAG
GTGCAGATCG AAACACGCAT CCTCGAAGTC AAGCTCACCG GCGATCTGGA CCTGGGCGTG
CAGTGGTACC TGGGCCGGCT GGCCGGCAAT TCGTCCAGCA CCACCGTCGC CAACGAAAGC
GGCAGCCAGG GTGCGCTCGG TGCCGGTGGC GTCGCGCTGG GCAGCGCCTC GATGTTCTAC
TCCTTCGTCA GCAGCAACCT GCAGGTGGCC CTGCGCGCGC TGGAAACACG CGGCCTGACC
CAGGTACTTT CGGCCCCCTC GCTGGTGGTG CTGAACAACC AGCAGGCGCA GATCCAGGTC
GGCGACAACA TTCCGATCAG CCAGACCACC GTCAACACCA GCGACTCCGA TACCACCCTG
AGCAGTGTCG AATACGTGCA GACCGGTGTC ATTCTCGATG TCGTGCCACG GATCAACCCC
GGTGGACTGG TGTACATGGA CATCCAGCAG CAAGTGAGCG ACGCCGACGA CAGCGCCGTC
ACCACCACCC AGCCCAACCC GCGCATTTCC AGCCGTGCGG TATCGACCCA AGTGGCGGTG
CAAAGCGGCC AGACGGTACT GCTGGGGGGC CTGATCAAGC AGGACAACGG CCAATCCGAT
ACCCGTGTGC CGGGCCTGTC GAGCATACCC GGGCTGGGCT GGCTGTTCGG CAGCACCTCC
AAAAGCCGTG ACCGTACCGA GTTGATCGTG CTGATCACGC CAAGGGTCGT GAACAACCCT
GAACAGGCGC GCCAGGTCAC CGCAGATTAT CGCCAGCAGA TGCAGGTGCT CAGGGAACAA
GCAGCGCTGA AGAGGTAA
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| Protein sequence | MTMQAPSRHP FPTLRAPLLG LSVAIALAGC ATTQRDLHTD PALLQQAFSG ADAPAPAATG
PEPAAAPAAA APRTAPGRQI ITGNQRFIRK ASATPPAAKD EQGDIVFNFT DQPIEAVINS
VMGDLLHENY SISQGVKGSV SFSTSKPVTK QQALSILETL LSWTDNAMIR QGERYVILPA
DKAVAGKLVP QVPVAQPATG LAARLYPLRY IGASEMQKLL KPFVRENAFL LVDPARNVIS
LAGTPDELAN YQDTIDTFDV DWLKGMSIGV YGLQRASVAE LMPQLQKLFG PDSGMPLSDM
VRFMPNERTN SIVAISAQPE YLQEVGDWIR TIDEGGGNEP QLFVYDVRNM KAADLARYLR
QIYGSGQIND DKAASVAPGL KTTSLTSLNG TGSQSGQGLS GMGMNTQASI REAPSEDDYE
DTGQPEASSA ESADGSVKSL EESVRITAQK SSNQLLVRTR PAQWKEIESA IKRLDSPPLQ
VQIETRILEV KLTGDLDLGV QWYLGRLAGN SSSTTVANES GSQGALGAGG VALGSASMFY
SFVSSNLQVA LRALETRGLT QVLSAPSLVV LNNQQAQIQV GDNIPISQTT VNTSDSDTTL
SSVEYVQTGV ILDVVPRINP GGLVYMDIQQ QVSDADDSAV TTTQPNPRIS SRAVSTQVAV
QSGQTVLLGG LIKQDNGQSD TRVPGLSSIP GLGWLFGSTS KSRDRTELIV LITPRVVNNP
EQARQVTADY RQQMQVLREQ AALKR
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