| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2116 |
|---|
| Symbol | |
|---|
| ID | 6111069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 2349136 |
|---|
| End bp | 2351202 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641621911 |
|---|
| Product | trehalose synthase |
|---|
| Protein accession | YP_001748985 |
|---|
| Protein GI | 170721297 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | [TIGR02455] trehalose synthase, Pseudomonas stutzeri type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.431979 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.743493 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAC CAGACCCGTC ATACGTCAAA TGGCTCGAAG AACGCTCCAT GCTCAAGGCC
TCGCAGGAGC GAGCCCGGCT GTATTCAGGG CAATCGCGCC TGTGGATGAA CCCCTACGCC
GAAACGCAGC CACGCCGCGC CACCGACATT GCGTCGGTAT GGCTCACCGT CTATCCCGAC
GCGATCATCG CGCCTGAAGG CTGCTCGGTG CTCGGCGCGC TGGGCCACGA AGCCTTGTGG
AAGCGCCTGT CGGAAATTGG CGTGCAGGGC ATTCACACAG GCCCCATCAA ACAGTCCGGC
GGTGTCAGCG GGCGCGACTT CACCCCCAGC GTGGACGGCA ATTTCGACCG CATCAGCTTC
GACATCGACC CGCTCTACGG CAGTGAACAG GAGCTGGTGC AGATGAGCCG CATGGCGGCG
GCGCACAATG CCGTGACCAT CGACGACCTG ATCCCCTCGC ACACCGGCAA GGGCGCCGAT
TTCCGCCTGG CCGAGCTGGC CCACGGCGCC TATCCAGGGC TGTACCACAT GGTCGAGATC
CGTGAGGAAG ACTGGCCGCT GCTGCCGGAC GTGCCCCCTG GCCGTGATTC GGTCAACCTG
CTGCCCGCAC AGTGCGACGA ACTCAAGGCA CACCACTACA TCGTCGGCCA GCTGCAACGG
GTGATCTTCT TCGAGCCTGG CGTGAAGGAG ACCGACTGGA GCGCAACGCC ACCGATCACT
GGTGTCGATG GCAAGACGCG GCGCTGGGTC TACCTGCACT ACTTCAAGGA TGGCCAGCCG
TCGCTGAACT GGCTGGACCC AAGCTTTGCC GCCCAGCAAA TGATCATCGG CGACGCCCTG
CATGCGCTGG ACTGCCTGGG CGCGCGCGGC CTGCGCCTGG ATGCCAACGG TTTTCTCGGG
GTCGAGACCT GCGCCAGTGG TACCGCCTGG TCAGAAAGCC ACCCGCTGTC GATCGTGGGT
AACCAGCTGA TCGGTGGCAT GATCCGCAAG GCCGGCGGGT TCAGCTTCCA GGAGCTGAAC
CTGACCCTGG ACGACATCGC GCAGATGTCC AAGGGCGGCG CCGACCTGTC CTATGACTTC
ATCACCCGCC CGGCTTACCA GCATGCGCTG CTGACCGGCG ATACCGAGTT CCTGCGCCTG
ATGCTCAAGG AAATGCACGG TTTCGGCATC GACCCGGCGT CGTTGATTCA CGCCCTGCAG
AACCACGACG AACTCACCGT CGAGCTGGTG CACTTCTGGA CCCTGCACGC CCATGACATG
TACCTGTACC GGGGCCAGAC CCTGCCCGGC AACATCCTGC GCGAACATAT CCGCGAGGAA
ATCTACGAAC GTCTCTCGGG CGAACACGCC CCTTACAACT TGCGCTTTGT CACCAACGGC
ATCTCCTGCA CCACCGCCAG CCTGATCACG GCGGCCTTGG GCATCCGTGA CCTGGACCAG
ATTGGCCCGG CGGAGATCGA GCTGATCCAG AAGGTGCACC TGTTGCTGGT GATGTACAAC
GCCATGCAGC CCGGTGTAGT CGCACTGTCC GGTTGGGACC TGGTCGGCGC CCTGCCGCTG
CCGGCCGAGG CGGTGGCGCA AAAGATGGCC GATGGCGATA CCCGCTGGAT CCACCGTGGC
GCATACGACC TGGCCGGGCT CGATGCGCAG GCCGAGGCAT CGGTGCGTGG CATGCCGCGC
GCACGCTCAC TGTACGGCAG CCTCGACCAG CAGCTGGAAA GCAGCGATTC GTTTGCCAGC
AAAGTTAAAA AACTGCTCGC CGTGCGCCAG GCCTACGGTA TTGCCAGCAG CCGCCAGGTA
CTGGTGCCCG AGGTCAGCAG CCCGGGGTTG CTGGTGATGG TGCATGAGCT ACCGGCCGGG
CGTGGCATCC AGATCAGCGC GCTGAACTTC GGGCAGGAGG TGATCGCTGA AGAGCTGCTG
CTGACCGGCT TCACGCCCGG GACGGTGGTG GACATGATCA ACGAGACGGT CGAAGGCGAC
CTGACCGAGG ATGGGCGGTT GATGATCAAC CTGGATCCGT ATGAAGCCTT GTGCCTGAGA
ATCGTCAACA GCAGTGGGCA CGTCTGA
|
|---|
| Protein sequence | MTQPDPSYVK WLEERSMLKA SQERARLYSG QSRLWMNPYA ETQPRRATDI ASVWLTVYPD
AIIAPEGCSV LGALGHEALW KRLSEIGVQG IHTGPIKQSG GVSGRDFTPS VDGNFDRISF
DIDPLYGSEQ ELVQMSRMAA AHNAVTIDDL IPSHTGKGAD FRLAELAHGA YPGLYHMVEI
REEDWPLLPD VPPGRDSVNL LPAQCDELKA HHYIVGQLQR VIFFEPGVKE TDWSATPPIT
GVDGKTRRWV YLHYFKDGQP SLNWLDPSFA AQQMIIGDAL HALDCLGARG LRLDANGFLG
VETCASGTAW SESHPLSIVG NQLIGGMIRK AGGFSFQELN LTLDDIAQMS KGGADLSYDF
ITRPAYQHAL LTGDTEFLRL MLKEMHGFGI DPASLIHALQ NHDELTVELV HFWTLHAHDM
YLYRGQTLPG NILREHIREE IYERLSGEHA PYNLRFVTNG ISCTTASLIT AALGIRDLDQ
IGPAEIELIQ KVHLLLVMYN AMQPGVVALS GWDLVGALPL PAEAVAQKMA DGDTRWIHRG
AYDLAGLDAQ AEASVRGMPR ARSLYGSLDQ QLESSDSFAS KVKKLLAVRQ AYGIASSRQV
LVPEVSSPGL LVMVHELPAG RGIQISALNF GQEVIAEELL LTGFTPGTVV DMINETVEGD
LTEDGRLMIN LDPYEALCLR IVNSSGHV
|
|---|
| |