| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2099 |
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| Symbol | |
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| ID | 6111052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 2332003 |
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| End bp | 2332824 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641621894 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001748968 |
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| Protein GI | 170721280 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.329153 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCAA CTCCCAGCAG GGACACCGTG CTGTGCATTT CCCTGGCCGG CCGGCCAGGT
CACTTTGGCG TTCGCTTTCA TAACCACCTG TACCGGCAGT TGGGCCTGGA CTACTACTAC
AAGGCGATGA GCACCGATGA CTTGCCGGCC GCTGTGGCGG GTATCCGCGC GCTGGGCATC
CGCGGCTGTG GTGTTTCCAT GCCCTACAAG GAGGCCTGCA TGGCCTTGGT CGATGAGGTT
GACCCGTCAG CGGCAGCCAT CGAGTCGGTC AACACCGTGG TCAACACGGC AGGTCATCTG
AAAGCCTACA ACACCGACTA CCTGGCAGTG CGGCAGCTGC TCGAGCAGCA TCGTGTCGAC
CCGTCTACAG CCTTTGCCCT GCGCGGCAGT GGTGGCATGG CCAAGGCGGT TGCCAGTGCT
CTGCGCGATG CCGGGTTCAA GGAGGGCATC ATCGTCGCCC GCAACGAGCA GGCGGGGCGG
CAGTTGGCCG ACGTTTGTGG CTATCGCTGG GTCGCTGAGC TGGGTGACCG GTGCCCGCCG
ATGCTGGTGA ATGTGACGCC GATCGGCATG GCGGGCGGGC AAGAGGCCCA CGAGCTGGCG
TTCAGCGAGA ACGCCATTGC TGCGGCGCAG CGGGTCTTCG ATGTGGTGGC TATGCCGGCG
CAGACGCCCT TGATCCGCCG GGCGCAGGCG CTCGGCAAGC CGGTGATTAC CGGTTTGGAG
GTGATCGCGT TGCAAGCACT GGAGCAGTTC GTACTGTACA CCGGCGTGCG ACCTACCCGG
GAGCAGGTCG AGGCTGCAGT GGCATACGCC CGGGACGTCT AG
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| Protein sequence | MTATPSRDTV LCISLAGRPG HFGVRFHNHL YRQLGLDYYY KAMSTDDLPA AVAGIRALGI
RGCGVSMPYK EACMALVDEV DPSAAAIESV NTVVNTAGHL KAYNTDYLAV RQLLEQHRVD
PSTAFALRGS GGMAKAVASA LRDAGFKEGI IVARNEQAGR QLADVCGYRW VAELGDRCPP
MLVNVTPIGM AGGQEAHELA FSENAIAAAQ RVFDVVAMPA QTPLIRRAQA LGKPVITGLE
VIALQALEQF VLYTGVRPTR EQVEAAVAYA RDV
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