| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_2007 |
|---|
| Symbol | |
|---|
| ID | 6110960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 2239690 |
|---|
| End bp | 2240709 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641621802 |
|---|
| Product | 4-hydroxy-2-ketovalerate aldolase |
|---|
| Protein accession | YP_001748876 |
|---|
| Protein GI | 170721188 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR03217] 4-hydroxy-2-oxovalerate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACA CGAACAAAAA GATCCATATC TCAGACGTCA CCCTGCGCGA CGGTATGCAT
GCCGTGCGTC ACCGCTACAG CCTGGAACAG GTCGCGGGCA TCGCTCAGGC CCTGGACCAA
GCCGGCGTCG ACAGCATTGA GGTCGCCCAC GGCGATGGCC TGCAGGGTTC GAGCTTCAAT
TACGGCTTCG GTGCCCATAC CGACTTTGAG TGGATCGCCG CGGTAGCCGC AGTGGTGCAG
CGCGCCCGTA TCGCCACGTT GCTGCTGCCG GGCATTGGCA CTGTGCACGA CCTCAAGGCC
GCCTACGACG CTGGCGCGCG GATCGTGCGC GTGGCCACCC ACTGCACCGA GGCTGATGTC
TCGCGCCAAC ACATCGAATA CGCCCGCTCC CTGGGCATGG ACACCGTGGG CTTCTTGATG
ATGAGCCACA TGCAGACCCC GGCCGGCCTC GCCAGGCAGG GCAAACTGAT GGAAAGCTAC
GGTGCACAAT GCATCTACGT TGTGGATTCC GGTGGCGCGA TGAACATGTG GGACATCGCC
GAGCGCTTCA AGGCCATGAA GGACGTGCTT GACCCAGCGA CGCAGACCGG CATGCACGCC
CACCACAACC TCAGCCTGGG CGTGGCCAAC AGCCTGGTCG CCCTGGAGCA CGGCTGCGAT
CGCGTCGATG CCAGCCTGAC CGGCATGGGC GCCGGGGCCG GCAACGCACC GCTCGAGGTA
TTCGCCGCCG CCGCCGAGCG CATGGGCCTG AACCACGGCT GCGACGTCAA AAAGCTGATC
GATGCCGCCG AAGACATTGT CCGCCCCCTG CAGGAACGGG TGGTGAGGGT CGACCGGGAA
ACGCTGGCCT TGGGTTATGC AGGGGTCTAT TCAAGTTTCC TGCGCCATGC CGAGGCCGCT
GCGGCCAAAT ACGGCCTGTC GACTTTCGAC ATTCTGGTTG AACTGGGCAA GCGCCGCATG
ATCGGTGGCC AGGAAGACAT GATCATCGAT GTCGCCCTGG ATTTGCTCAA TCAAGGATGA
|
|---|
| Protein sequence | MINTNKKIHI SDVTLRDGMH AVRHRYSLEQ VAGIAQALDQ AGVDSIEVAH GDGLQGSSFN
YGFGAHTDFE WIAAVAAVVQ RARIATLLLP GIGTVHDLKA AYDAGARIVR VATHCTEADV
SRQHIEYARS LGMDTVGFLM MSHMQTPAGL ARQGKLMESY GAQCIYVVDS GGAMNMWDIA
ERFKAMKDVL DPATQTGMHA HHNLSLGVAN SLVALEHGCD RVDASLTGMG AGAGNAPLEV
FAAAAERMGL NHGCDVKKLI DAAEDIVRPL QERVVRVDRE TLALGYAGVY SSFLRHAEAA
AAKYGLSTFD ILVELGKRRM IGGQEDMIID VALDLLNQG
|
|---|
| |