Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1912 |
Symbol | |
ID | 6110863 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 2142592 |
End bp | 2143440 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641621707 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_001748784 |
Protein GI | 170721096 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.820542 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.253219 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCAGC CGGCCATCCT TGCCGGCCTG ATCGGCCGTG GTATTCAGCT GTCGCGCACC CCTGCCCTGC ATGAACATGA AGGCGATGCG CAGGACTTAC GCTACCTCTA TCGCTTGATT GACGCCGACC AACTGCAGCT GGACGACAGC GCCTTGGCGC AATTGCTCGA AGCCGCCCAG CACACAGGCT TCACCGGGCT CAATATCACC TACCCGTTCA AGCAGGCGAT CCTGCCACTG CTCGACGAAC TGTCCGATGA GGCCAGGGGT ATCGGTGCGG TCAACACTGT GGTCCTCAAG GACGGCAGGC GTGTGGGCCA TAACACTGAC TGCCTGGGCT TCGCCGAGGG CTTGCGTCGC GGCCTGCCCG ACGTCGCGCG CCGGCAAGTG GTGCAGATGG GTGCCGGCGG TGCTGGCTCG GCAGTGGCCC ATGCGTTGCT GGGCGAAGGG GTCGAGCGGC TGGTGCTGTT CGAAGTGGAC GCAGCGCGCG CACAAGCACT GGTCGACAAC CTCAACGGCC ACTTCGGCGC AGATCGAGCC ATTGTGGGCA CAGACTTGGC GGCTGAGATT GCCGAGGCGG ACGGGCTGGT CAACACCACG CCGGTCGGCA TGGCCAAACT TCCGGGCACG CCGCTGCCGG TCGAGCTGCT GCATGCCCGG CTGTGGGTGG CGGAGATCAT CTATTTCCCG CTGGAAACCG AGCTGCTGCG CGCGGCACGG GCACTGGGCT GCCGGACACT GGATGGCAGC AACATGGCCG TGTTCCAGGC GGTGAAAGCG TTCGAACTGT TCAGTGGCCG CCAGGCCAAT GCCGAGCGCA TGCAGGCGCA TTTCGCCAGC CTCATCTGA
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Protein sequence | MTQPAILAGL IGRGIQLSRT PALHEHEGDA QDLRYLYRLI DADQLQLDDS ALAQLLEAAQ HTGFTGLNIT YPFKQAILPL LDELSDEARG IGAVNTVVLK DGRRVGHNTD CLGFAEGLRR GLPDVARRQV VQMGAGGAGS AVAHALLGEG VERLVLFEVD AARAQALVDN LNGHFGADRA IVGTDLAAEI AEADGLVNTT PVGMAKLPGT PLPVELLHAR LWVAEIIYFP LETELLRAAR ALGCRTLDGS NMAVFQAVKA FELFSGRQAN AERMQAHFAS LI
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