| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1904 |
|---|
| Symbol | |
|---|
| ID | 6110855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 2132812 |
|---|
| End bp | 2137308 |
|---|
| Gene Length | 4497 bp |
|---|
| Protein Length | 1498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641621699 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001748776 |
|---|
| Protein GI | 170721088 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.748697 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACTC CTCCGCTATC AAGCGCACAG GCAGCCATCG ATGCTTTCCA GGACGCCATA
CTCGGCAAGC GCCTGCCGCT CTGGTTGCGT CAGGCACCTA CCGAGCAATT GCCAGCAATC
AGCAAGGCAT TGGCAAACAG CCTTCGCAGC CGTGAGCAGG TAGATGCGCT GCTGCGCGGC
ATCGAAGGCA TCGACAGTTT CGTAGCATCG AAACTGGAAG AGGCCCTTGG CGAGCGTTAC
GGGCTTGACT GCAACTCGCG CTCGCTCAAG TTTGTGGAGG GCCATCGAGA ACCTGTGATC
AACAGTCAGC CGGTAGGCGC TCACCTCACC GAAGTGGTGT ATGAAGAAAA GCCGCTGCTT
GAGGTGGTAT TGCGCAACTT CACTGCCGAA CAGGCCCGGG CAGGTGGCCA GCCTCCCGGC
AACCGACTGC TGGTCCCGTG CCAGGGGAGG GCTACAGAGC CCACGAGCAT CGAGCTTGCC
GCACTGTGCC GTGAACTGGA CCTGGGTGAA CGGTATCAAC GTTATCTGGA TGCCATTTTA
AAACCTGAGG GTGATACCAG GCGTGTGGAA TCTCAGCTTG TGGATGCCAG CCGCTACGCC
ATGCTGGTGG ATGCCTACAA AGCCAGGCAG GAGGGAAAAC TGGATGACAG CGAGCTCCAG
TGGGCGGTGG CAGTGTGCAC AGATGGAAAG CTGCTGCGCC TGGGGGGCGA TCTTGTGCAG
GCCAGGCAGC TGAGGTTGCT GGGTTGCCAC ATCCAGCAGG TGGTGGTGTT CGATGTGATT
GACCAGGGCG TCTTGTTCGA CACAACGCGC CGTGTCCTGC TCTATGTGCC AGGGGATCCT
GTAGCGCCGT GGAGCACGTT CGAGAGCCTC GACAAACTGA ACCGTGAGCT GGGGCGTCGC
CTGCGAGACA AAACCTATCA GCGGTTTTTC AGCCGCTTGG TGCTGCGACG TGACAGCCAG
GCGTTTTTCA CGCAGGTCAC GGCGCTCTTC GATGATCTGG CGGACTGGGC TTTTCGCGAT
CTCGATCCGC GCTTGCACGC GTACCCGCAA CCGTTGTTCA ACAGCCTGGC ACAGGCATGT
ATCCGCCAGA TCAAGGAAGA TGCAGCGTTG ATCGCGGTGC CTGTGGCACG GCTTGATCGT
GAGGTTCAAC GCGAGCATGA CCAGCGCCTG GCGGCCGAAG GATGGACGCT GCTCAACCTG
GCCAGTTTCT TTGTGCCGGG CCTTGGCCTG GCGCTGCTTG CCGTGACGGC CTGGGAGCTG
TTGGGGGAGG TCTACCATGG CTTCGAGGCC TGGCACGAAG GGGATCGCCA AGAGGCGCTC
GACCATTTGA CCCATGTTGC CACCGACCTT GCCGTGCTTG CGACCACAGC GGTGGGGGTT
GGCGTGGCCC GACGGCTCTG GGCGCGTTCC ATGCGGGTCG ATGCCATGGT GCCGGCTCAG
CTGGATGACG GCACCGTCAA GCTCTGGCAA CAAGACTTGG CCCCGTTTCA AACCCAGGCC
CCCGTTGCAG CCGCAAGCCC GGACGCCTTG GGCATCCGGC GCCTGGATGG GCGGGCCTGG
ATCGAAATGG ACGGGCATCA CTATCGCGTG ACCGAGGTGG CCGGCGACGG TCAATGGCGC
CTGCGCCCCG TCGACGGCCA TGGTCCGATG CTACGTCACA ATGGTGCAGG CGCCTGGCGG
TTATGGAATG ATCAACCGGC CCTGTGGCGC AATACCTACC GTATGTTCCG TCGCCTGGGC
GAACCATTCA GCAGGCTGGA TGACGAAGGG ATCGATCTGG TTCTCCTGTT TCATGGCCTT
GATGGCGACG ACGTGCGTGG CTTGCATGTA TATGCCCAGG CACCAAGCCC AGAAATGCTC
GACAGCGTGC AGCGAGCCGG GCTCGATCAG CGTATTCGCA GCCTGGTTGG CTGTTTGCGC
AGCGGCGAGC TGGTTGCAGA TACGGCAGCA CTTGATCATG CACGGGGGTT GCCCGGCGCG
AGAGGGTTGT CAGATCAGGC GCTGGCTGAG CTGGTACGGA TTCAGCGCCG AACATTGCTG
CAGCGCTTGT ACGAAGCGCT GCAGCCCGGC GACAGTCCTG GCAGCGCTGC GCTGCGCCGG
ATCTTCCCCG GGCTGCACGC ACGTGCCGCA CGTGCGCTGG TACACGCCGC CAGTGGCGTT
GATCGCCGGC GTCTGCTGTC CAGTGGCAGA GTTGCGCTGG GTTTGGCGGA AGCGGCAAGG
ACCAGCCTGC TGGCTATCCG TCAGGCTCGG GTATTGGAAG CCTTTTACCT CGATACGCCG
CAGAATGCAG ACTTGGCAAG GGTAGCTCTG GGCCTGTTGC GGTATCTGCC TGGGCGCCAA
CACGGTGTGC GCTGGCGTTT GCATGAAGGT TACCTGGGCG GGCCGTTGTT GACGCGGACC
GAACAAGGGC TGCGTACGTT TGACTTGCTG CACACGAACG GCACGTTCCA GTTGCTTGAT
GACCAAGGCA CGGCGATCGG TGAGGCGGGG GAGTTGTTCG ACGTCATGGC GCCGGCCTAT
ACCCAAGAGC AGCGTGAGGC GATGGGGATC GGCGACCCGT TTTCGCATAA CCTCAGGGTG
ATGCTGGGGC GTGAAGCGGT CCGGCGTCGT GATGAGATGA GTCGTCTGCT CGGTGCGGTA
CGCCCGGGTG CTGTTCGAAC GCCCATACGC CTGGCCGATG GGCGATTAGG TTACCCGCTA
GGTGGCGGTG GAGTGAGTGG CTTCGCGTCA AGAGGCAGTG CCCTGAGGGC GGCGCTGCGG
GATCTCTTTC CTTGGTTGAG TGATGAGCAG ATCGAGACTT TCGCCGCTGA TGCTCGGCGC
TCAGGGCACC AACTTGAACG GGAACTGACC GACCTTCGCA ATGAACTCAT GGCTCTTCGC
AACACACTGG ATACATGGGT TGCACAGGAA CAGGGCGATG CCAGGGAAGA TCGGGATACC
TTGCGCGAGA CGTTACTCAG TAGCTGGAGT CGATCGGTTG GTGTGGGGGA ACTGCAAATC
GAGGCGCAAC AGAACCTGCA TGTCATGTTC TGCAACTTCA GGGCGGGCAG ACTGCCCAAC
ATACCCGCGC AGGTCAGCTT CAGAGGCGTT ACCAACCTTT CGCTACTGCA CCTGGATCTT
CTGGAGGTGC CCAGCAGCTT CCTGCTGGCT TTCCCTAACC TGCGGACCCT CGATCTGGGG
GGTAACCTGC TGACGTGCCT ACCGCGCCCG TTGCTGCAGA TAACGCAACT ACGGCACCTC
AGTCTGCCCA ACAACCGGAT CCGTCTGAAC CTGGCGCAAT CCGCCACACT GGCCAGTTGT
ACGAGCCTGC AATCCCTCGA CCTGTCCCAC AACCCGCTGG GGCGTCGATT TACGCTGGCC
GGTTTGACCG AACTGCGTTG GCTGAACCTG CGCGACACAC AGATAACGCA ATTCCCACCG
GGCCTGTTCG ACCGCGCTCA GCTGATATCC GTGGACTTGA GGGAGAACCG GATCAGGCAG
ATTCCAGAGC ATTTCTACCA GTTGCCCGTG CAGCGTAGGC GCAGGATCCG CCTGAGTGCG
AACCCCTTGG GCGAGGCCCA GACGCTTCGC TTGCAAGCCT CGTTGAGGAG CGACATTCCT
GCAATGGACG ACGAGCAGGT TCTTCTGCGG CTGAATTACG CTCGTGAAGT ATGGGGGGAT
GCGGTGGCCC CGGAGCATCG CGGCTTGATA CTTGCGGCCT GGGACTCGCT GGATGGAGAG
CAAGACACTG AACGTTTTTT CCGTGTCCTG CGCCAGCTGT TGCTGTCCGA GGATTTTCGT
GTCGATGCAC GTGCCATGGG CAATCGGGTG ATGGCGGTAC TGCAGGCGAT GGCCATGACG
CCGGAACTGA GGGAGAACCT GCTGTCCGTG GCCAATGATG AGTGGGGGTG CCAGGATGGT
GCAACCTGGT GCTTGAGCAA CCTCGAGCTG AACCTGCTGG TTTGGCAAGT TGAACATGCC
GCTCCCGGTA AAAGCGAGCG TGCCTTGCTG AGCCTGGGCC GGCGTTTATG GCGCCAGGAC
AAAGTCGACC GGTTTGCTGC CAGTTGGGCA CTCCAGCATG GCAGGGAACA GGAAGGGAGC
GAAGTGGGGT TGGCCTTCAG GGTCGGGCTA AGGGAGCGGC TTGACCTGCC CGTGCAGGTG
GGAGGTATGA GCTTCCATGC TATTTCAGGC GTTTTGGACG CGGACCTGGC AGAGGCAGAA
GCTGCGGTGC GGGGTTCGGA AAACCCAAGC GAGATTGCCA GGTCGATGGT CGACCGCGAA
TTCTGGCAGG CGCACCTCGA GCGTACCCAC CCTGACCGAT TCGCTGCGGT CGATCTGCCG
TTCAGGCGCC AGCTTGAAAC GCTGCTTGAC GATGAAGCGC TCACCGAGGG AGCAAAGCTG
GAACAGGCGG ATGGCATTCG TGATGCGCAG CGCGCTGCAC GCAGGGGGCT GATGCTGGAC
ATGACAATTC GGGCCATGGA AGTGGGGCCA GAAGAATCAG GGATCCATGT GCGTTGA
|
|---|
| Protein sequence | MHTPPLSSAQ AAIDAFQDAI LGKRLPLWLR QAPTEQLPAI SKALANSLRS REQVDALLRG
IEGIDSFVAS KLEEALGERY GLDCNSRSLK FVEGHREPVI NSQPVGAHLT EVVYEEKPLL
EVVLRNFTAE QARAGGQPPG NRLLVPCQGR ATEPTSIELA ALCRELDLGE RYQRYLDAIL
KPEGDTRRVE SQLVDASRYA MLVDAYKARQ EGKLDDSELQ WAVAVCTDGK LLRLGGDLVQ
ARQLRLLGCH IQQVVVFDVI DQGVLFDTTR RVLLYVPGDP VAPWSTFESL DKLNRELGRR
LRDKTYQRFF SRLVLRRDSQ AFFTQVTALF DDLADWAFRD LDPRLHAYPQ PLFNSLAQAC
IRQIKEDAAL IAVPVARLDR EVQREHDQRL AAEGWTLLNL ASFFVPGLGL ALLAVTAWEL
LGEVYHGFEA WHEGDRQEAL DHLTHVATDL AVLATTAVGV GVARRLWARS MRVDAMVPAQ
LDDGTVKLWQ QDLAPFQTQA PVAAASPDAL GIRRLDGRAW IEMDGHHYRV TEVAGDGQWR
LRPVDGHGPM LRHNGAGAWR LWNDQPALWR NTYRMFRRLG EPFSRLDDEG IDLVLLFHGL
DGDDVRGLHV YAQAPSPEML DSVQRAGLDQ RIRSLVGCLR SGELVADTAA LDHARGLPGA
RGLSDQALAE LVRIQRRTLL QRLYEALQPG DSPGSAALRR IFPGLHARAA RALVHAASGV
DRRRLLSSGR VALGLAEAAR TSLLAIRQAR VLEAFYLDTP QNADLARVAL GLLRYLPGRQ
HGVRWRLHEG YLGGPLLTRT EQGLRTFDLL HTNGTFQLLD DQGTAIGEAG ELFDVMAPAY
TQEQREAMGI GDPFSHNLRV MLGREAVRRR DEMSRLLGAV RPGAVRTPIR LADGRLGYPL
GGGGVSGFAS RGSALRAALR DLFPWLSDEQ IETFAADARR SGHQLERELT DLRNELMALR
NTLDTWVAQE QGDAREDRDT LRETLLSSWS RSVGVGELQI EAQQNLHVMF CNFRAGRLPN
IPAQVSFRGV TNLSLLHLDL LEVPSSFLLA FPNLRTLDLG GNLLTCLPRP LLQITQLRHL
SLPNNRIRLN LAQSATLASC TSLQSLDLSH NPLGRRFTLA GLTELRWLNL RDTQITQFPP
GLFDRAQLIS VDLRENRIRQ IPEHFYQLPV QRRRRIRLSA NPLGEAQTLR LQASLRSDIP
AMDDEQVLLR LNYAREVWGD AVAPEHRGLI LAAWDSLDGE QDTERFFRVL RQLLLSEDFR
VDARAMGNRV MAVLQAMAMT PELRENLLSV ANDEWGCQDG ATWCLSNLEL NLLVWQVEHA
APGKSERALL SLGRRLWRQD KVDRFAASWA LQHGREQEGS EVGLAFRVGL RERLDLPVQV
GGMSFHAISG VLDADLAEAE AAVRGSENPS EIARSMVDRE FWQAHLERTH PDRFAAVDLP
FRRQLETLLD DEALTEGAKL EQADGIRDAQ RAARRGLMLD MTIRAMEVGP EESGIHVR
|
|---|
| |