| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1888 |
|---|
| Symbol | metH |
|---|
| ID | 6110839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 2114299 |
|---|
| End bp | 2118006 |
|---|
| Gene Length | 3708 bp |
|---|
| Protein Length | 1235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641621683 |
|---|
| Product | B12-dependent methionine synthase |
|---|
| Protein accession | YP_001748760 |
|---|
| Protein GI | 170721072 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACC GCAGCGCTCG TCTCCAAGCA CTCCAGCACG CACTCAATGA GCGCATTCTG
ATCCTCGACG GCGGCATGGG TACTATGATC CAGAGTTACC GCCTCGAGGA ACACGACTAT
CGTGGCACGC GCTTCGCCGA TTGGCCAAGC GATGTAAAAG GTAACAACGA CCTGCTGCTG
CTTAGCCGCC CCGATGTCAT CGCTGCCATC GAGAAGGCGT ACCTGGACGC TGGCGCCGAC
ATTCTCGAAA CCAACACCTT CAACGCCACG CAGATTTCCC AGGCCGATTA CGGCATGGAG
TCGCTCGTCT ACGAACTGAA CGTCCAGGGC GCGCGCATCG CCCGCCAGGT TGCCGACGCC
AAGACCCTGG AAACGCCGGA CAAGCCACGC TTCGTTGCCG GCGTGCTCGG CCCGACCAGC
CGAACCTGCT CGATTTCCCC GGACGTCAAC GACCCCGGCT ACCGCAACGT CACCTTCGAC
GAACTGGTGG AAAACTACAT CGAGGCGACC CGCGGCCTGA TCGAGGGTGG CGCCGACCTG
ATCCTCATCG AGACCATCTT CGACACGCTC AACGCCAAGG CAGCGATCTT CGCCGTGCAG
CAGGTGTTCG AAGATGACGG CATCGAACTG CCGATCATGA TCTCCGGCAC CATCACCGAT
GCCTCGGGCC GTACCCTGTC CGGCCAGACC ACCGAAGCGT TCTGGAACTC GGTACGCCAT
GCCAAGCCGA TTTCCGTTGG CCTGAACTGC GCGCTGGGGG CGAAGGACCT GCGCCCTTAC
CTTGAAGAGC TGTCGACCAA GGCCGACACC CACGTTTCCG CCCACCCCAA TGCCGGCCTG
CCAAACGCCT TCGGGGAGTA CGACGAAACC CCGGCCGAGA TGGCTGCAGT GGTCGAGGAG
TTCGCGGCCA GTGGTTTCCT CAACATCATC GGCGGTTGCT GCGGTACCAC GCCCGGGCAC
ATCCAGGCCA TCGCCGAGGC AGTGGCCAAA TACAAGCCGC GCCAGATTCC AACGATCGCC
AAGGCCTGCC GGCTGTCGGG CCTGGAACCG TTCACCATCG ATCGCCAGTC GCTGTTCGTC
AACGTCGGTG AGCGCACCAA CATCACCGGC TCCGCCAAGT TCGCCCGGCT GATCCGCGAA
GAGAATTACA CCGAAGCGCT GGAGGTCGCC CTGCAGCAGG TAGAGGCCGG TGCTCAGGTA
ATCGACATCA ACATGGACGA AGGGATGCTC GACTCCCAGG CAGCCATGGT CCGTTTCCTC
AACATGATTG CGGGCGAGCC GGACATCTCT CGCGTGCCGA TCATGATCGA CTCGTCGAAA
TGGGAAGTGA TCGAAGCGGG CCTCAAATGC ATCCAGGGCA AGGGCATCGT CAACTCGATC
TCCATGAAAG AAGGCGTCGA GCAATTCAAG CACCACGCAC GCCTGTGCAA ACGCTACGGC
GCGGCCGTGG TAGTGATGGC CTTCGACGAG GTCGGCCAGG CCGACACCGC TGCCCGCAAG
AAGGAAATCT GCCAGCGCAG CTACGACATT CTGGTCAATG AAGTCGGCTT CCCGCCGGAA
GACATCATTT TCGACCCGAA CATCTTCGCC GTCGCTACCG GCATCGAAGA GCACAACAAC
TATGCCGTGG ACTTCATCGA GGCCTGCGCC TACATCCGTG ACCACCTGCC ACATGCGCTG
AGCTCGGGCG GCGTGTCCAA CGTGTCGTTC TCGTTCCGCG GCAACAACCC GGTGCGCGAG
GCGATCCACT CGGTATTCCT GTTCCACGCC ATCCGCAACG GCCTGACGAT GGGTATCGTC
AACGCCGGCC AGCTGGAGAT CTACGACGAG ATCCCGGCCG AGCTGCGCGA GCGGGTCGAG
GACGTGGTGC TCAACCGCAC CCCTGAAGGT ACCGATGCGC TGCTGGCCAT CGCCGATGAT
TACAAAGGCG GGGGTGCCAC CAAGGAAGTC GAGAACGAGG CCTGGCGCTC ACTGCCGGTC
GGCAAGCGTC TGGAACATGC GCTGGTCAAA GGCATCACCG CACACATCGT CGAAGACACC
GAGGAGTGCC GCCAGCAATG TGCGCGCCCG ATCGAAGTCA TCGAAGGGCC GCTGATGAGC
GGCATGAACG TGGTTGGCGA CCTGTTCGGC GCGGGCAAGA TGTTCCTGCC GCAGGTGGTC
AAGTCGGCGC GGGTGATGAA GCAGGCCGTG GCCCACCTGA TCCCGTTCAT CGAGGCCGAA
AAAGGCGACA AGCCCGAAGC CAAGGGCAAG ATCCTCATGG CGACGGTCAA GGGCGACGTG
CACGACATCG GCAAGAACAT TGTCGGCGTG GTCCTGGGCT GCAACGGCTA TGACATCGTC
GACCTCGGCG TGATGGTACC GGCAGAGAAG ATCCTGCAGA CCGCCCGCGA CGAGAAGTGC
GACATCATCG GTTTGTCCGG CCTGATCACC CCGTCGCTGG ACGAGATGGT TCATGTTGCC
CGCGAAATGC AGCGCCAGGG CTTCGAGCTG CCGCTGATGA TCGGCGGCGC CACCACGTCC
AAGGCCCATA CCGCAGTCAA GATCGAGCCC AAGTACAGCA ACGATGCGGT GATCTATGTA
ACCGACGCCT CCCGCGCGGT AGGTGTGGCC ACCCAGTTGC TGTCCAAGGA ACTCAAGCCC
GGCTTCGTTG AAAAAACCCG CCTGGACTAC ATCGAAGTGC GTGAACGCAC TGCCAACCGC
AGTGCCCGCA CCGAGCGCCT GAGCTACGCG CAGGCAGTGG CGGCCAAGCC AAAATACGAC
TGGGCCGCTT ATCAGCCGGC GGTCCCTGCC TTCACAGGCG TCAAGGTGCT GGACAACATC
GACCTGCGCA CCCTGGCCGA GTACATCGAC TGGACGCCGT TCTTCATTTC CTGGGACCTG
GCCGGCAAAT TCCCACGCAT CCTCACCGAT GAAGTGGTGG GTGAAGCGGC AACCTCGCTG
TACAAGGATG CCCGCGAGAT GCTCGACAAA CTGATCGACG AGAAGCTGAT CAGTGCGCGC
GCCGTGTTCG GCTTCTGGCC AGCCAACCAG GTTGCCGATG ACGACATTCA GGTCTACGGC
GACAACGGTC AGCCCCTGGC CACCTTGCAC CACCTGCGCC AGCAGACCAT CAAGCCCGAT
GGCAAGCCGA ACCTCTCCCT GGCCGACTTC GTCGCGCCCA AAGACAGTGG CGTCACCGAC
TACGTGGGGG GCTTCATCAC CACCGCCGGC ATTGGTGCCG AGGAAGTGGC AAAGGCTTAC
CAGGACAAGG GCGACGACTA CAACTCGATC ATGGTCAAGG CCCTCGCCGA CCGCCTGGCC
GAGGCATGCG CCGAGTGGCT GCACGAGCAG GTGCGTAAAG AGCACTGGGG TTATGCGCGC
GACGAACACC TGGACAACGA GGCACTGATC AAGGAACAGT ACAGCGGCAT CCGCCCTGCA
CCAGGCTACC CGGCCTGCCC GGACCATACC GAAAAAGAAA CGCTGTTCCG CCTGCTCGAT
GGCACAGCCA TCGGTGAAAC CGGCCCCAGC GGCGTGTTCC TCACTGAACA CTTTGCCATG
TTCCCCGCGG CTGCGGTCAG CGGTTGGTAC TTTGCTCACC CACAGGCGCA GTACTTTGCC
GTGGGCAAGA TCGACAAGGA CCAGATAGAC AGCTACAGCG CACGCAAAGG TCAGGATGTG
AGCGTCAGCG AGCGCTGGCT GGCGCCTAAC CTGGGCTACG ACAGCTGA
|
|---|
| Protein sequence | MSDRSARLQA LQHALNERIL ILDGGMGTMI QSYRLEEHDY RGTRFADWPS DVKGNNDLLL
LSRPDVIAAI EKAYLDAGAD ILETNTFNAT QISQADYGME SLVYELNVQG ARIARQVADA
KTLETPDKPR FVAGVLGPTS RTCSISPDVN DPGYRNVTFD ELVENYIEAT RGLIEGGADL
ILIETIFDTL NAKAAIFAVQ QVFEDDGIEL PIMISGTITD ASGRTLSGQT TEAFWNSVRH
AKPISVGLNC ALGAKDLRPY LEELSTKADT HVSAHPNAGL PNAFGEYDET PAEMAAVVEE
FAASGFLNII GGCCGTTPGH IQAIAEAVAK YKPRQIPTIA KACRLSGLEP FTIDRQSLFV
NVGERTNITG SAKFARLIRE ENYTEALEVA LQQVEAGAQV IDINMDEGML DSQAAMVRFL
NMIAGEPDIS RVPIMIDSSK WEVIEAGLKC IQGKGIVNSI SMKEGVEQFK HHARLCKRYG
AAVVVMAFDE VGQADTAARK KEICQRSYDI LVNEVGFPPE DIIFDPNIFA VATGIEEHNN
YAVDFIEACA YIRDHLPHAL SSGGVSNVSF SFRGNNPVRE AIHSVFLFHA IRNGLTMGIV
NAGQLEIYDE IPAELRERVE DVVLNRTPEG TDALLAIADD YKGGGATKEV ENEAWRSLPV
GKRLEHALVK GITAHIVEDT EECRQQCARP IEVIEGPLMS GMNVVGDLFG AGKMFLPQVV
KSARVMKQAV AHLIPFIEAE KGDKPEAKGK ILMATVKGDV HDIGKNIVGV VLGCNGYDIV
DLGVMVPAEK ILQTARDEKC DIIGLSGLIT PSLDEMVHVA REMQRQGFEL PLMIGGATTS
KAHTAVKIEP KYSNDAVIYV TDASRAVGVA TQLLSKELKP GFVEKTRLDY IEVRERTANR
SARTERLSYA QAVAAKPKYD WAAYQPAVPA FTGVKVLDNI DLRTLAEYID WTPFFISWDL
AGKFPRILTD EVVGEAATSL YKDAREMLDK LIDEKLISAR AVFGFWPANQ VADDDIQVYG
DNGQPLATLH HLRQQTIKPD GKPNLSLADF VAPKDSGVTD YVGGFITTAG IGAEEVAKAY
QDKGDDYNSI MVKALADRLA EACAEWLHEQ VRKEHWGYAR DEHLDNEALI KEQYSGIRPA
PGYPACPDHT EKETLFRLLD GTAIGETGPS GVFLTEHFAM FPAAAVSGWY FAHPQAQYFA
VGKIDKDQID SYSARKGQDV SVSERWLAPN LGYDS
|
|---|
| |