Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1779 |
Symbol | prpD |
ID | 6110729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 1978749 |
End bp | 1980233 |
Gene Length | 1485 bp |
Protein Length | 494 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641621574 |
Product | 2-methylcitrate dehydratase |
Protein accession | YP_001748652 |
Protein GI | 170720964 |
COG category | [R] General function prediction only |
COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.293801 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.00426686 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGCCA ACGTAGACCT GAACGAGCGC CCTGACTATG ACGTGGTGCT GCAAACCCTT GCCGATTACG TTCTCACCTA CCGCGTCGAG TCCCCCGAGG CGTTGGACAC CGCGCGCAGT TGCCTGATGG ACACCTTGGG CTGCGGCCTG CTGGCCCTGC GCTTTCCAGA GTGCACCAAG CACCTCGGCC CGCTGGTGGA GGGCACAGTG GTACCCAACG GCGCCCGGGT GCCCGGCACC AGTTACCGGC TCGATCCGGT CAAGGCCGCC TGGGATATCG GCTGCACCGT ACGTTGGCTT GATTACAACG ACACCTGGCT TGCCGCAGAG TGGGCCCACC CTTCCGATAA CCTAGGGGGG ATCCTTGCGG TAGCTGATCA CTTGTCGCAA AAACGGGTGG CCAAGGGTGA AGGCCCGCTG TTCATGCGCG AAGTGCTCGA GGCCATGGTC ATGGCCCATG AGATACAGGG TGTGCTGGCG CTGGAAAACG CCTTCAATCG CGTCGGCCTG GACCACGTGC TGCTGGTCAA GGTGGCCTCC ACAGCCGTGT GCGCCAAGTT GATGGGTGCC AATCGTGAAC AACTGCTCTC GGCCTTGTCC CACGCCTTTG TCGATGGCCA GGCGCTGCGC ACCTACCGTC ATGCACCCAA CGCCGGCTCA CGCAAGTCGT GGGCTGCCGG TGATGCTTCC AGCCGGGGCG TACGCCTGGC CGATATCGCG CTGCGTGGCG AGATGGGTGT GCCCGGGGTG CTGACCGCGC CGCAGTGGGG TTTTTATGAT GTGTCGTTCA GCCATACCAA CAAGGACCTG GCGCTCAAGC CTTCTGCCCA GCAGGCGCTG CGCATACCGC AGGCGTTGGC CAGCTACGTG ATGGAGAACG TGTTGTTCAA GGTCAGTTTC CCGGCCGAGT TCCACGCCCA GACCGCCTGC GAAGCCGCTG TGAGCCTGCA CCCGCAAGTG CGCAACCGTC TGCACGAAGT CGACCGTATC GTCATCACGA CCCAGGAATC AGCCATTCGC ATCATTTCCA AGGTCGGCCC GCTGGCCAAT GCTGCTGACC GCGACCACTG CCTGCAGTAC ATGGTGGCGG TGCCGCTTAT ATTCGGCCAT CTGGTGGCCG AGCATTACGA AGATGCCTTC CACGCCGCCC ACCCGAGCAT CGACCGTCTG CGCGAAAAGA TGGAGGTGGT CGAGGACCCT CGTTTCAGCC GCGAATACCT GGAGCCGGAC AAGCGCTCGA TCGCCAATGG CTTGCAGGTG TTCTTCAAGG ATGGCAGCAG TACCGAACAG GTGGTGGTGG AATACCCGGT CGGGCACCGG CGCCGGCGCG GGGAGGGCAT CCCCTTGCTG GAGGCCAAGT TCAGGGACAA CCTGGCGACG CGGTTTGCGC CCCAGCGTTG CCTGGAGATT TTCGAGCTGT GCGAGGATCA ACAGCGGCTG GAGGGTACGG CGGTACACCG GTTTGTGGAT TTGTTCGTGA CCTGA
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Protein sequence | MSANVDLNER PDYDVVLQTL ADYVLTYRVE SPEALDTARS CLMDTLGCGL LALRFPECTK HLGPLVEGTV VPNGARVPGT SYRLDPVKAA WDIGCTVRWL DYNDTWLAAE WAHPSDNLGG ILAVADHLSQ KRVAKGEGPL FMREVLEAMV MAHEIQGVLA LENAFNRVGL DHVLLVKVAS TAVCAKLMGA NREQLLSALS HAFVDGQALR TYRHAPNAGS RKSWAAGDAS SRGVRLADIA LRGEMGVPGV LTAPQWGFYD VSFSHTNKDL ALKPSAQQAL RIPQALASYV MENVLFKVSF PAEFHAQTAC EAAVSLHPQV RNRLHEVDRI VITTQESAIR IISKVGPLAN AADRDHCLQY MVAVPLIFGH LVAEHYEDAF HAAHPSIDRL REKMEVVEDP RFSREYLEPD KRSIANGLQV FFKDGSSTEQ VVVEYPVGHR RRRGEGIPLL EAKFRDNLAT RFAPQRCLEI FELCEDQQRL EGTAVHRFVD LFVT
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