Gene PputW619_1779 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_1779 
SymbolprpD 
ID6110729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp1978749 
End bp1980233 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content63% 
IMG OID641621574 
Product2-methylcitrate dehydratase 
Protein accessionYP_001748652 
Protein GI170720964 
COG category[R] General function prediction only 
COG ID[COG2079] Uncharacterized protein involved in propionate catabolism 
TIGRFAM ID[TIGR02330] 2-methylcitrate dehydratase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.293801 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.00426686 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGCCA ACGTAGACCT GAACGAGCGC CCTGACTATG ACGTGGTGCT GCAAACCCTT 
GCCGATTACG TTCTCACCTA CCGCGTCGAG TCCCCCGAGG CGTTGGACAC CGCGCGCAGT
TGCCTGATGG ACACCTTGGG CTGCGGCCTG CTGGCCCTGC GCTTTCCAGA GTGCACCAAG
CACCTCGGCC CGCTGGTGGA GGGCACAGTG GTACCCAACG GCGCCCGGGT GCCCGGCACC
AGTTACCGGC TCGATCCGGT CAAGGCCGCC TGGGATATCG GCTGCACCGT ACGTTGGCTT
GATTACAACG ACACCTGGCT TGCCGCAGAG TGGGCCCACC CTTCCGATAA CCTAGGGGGG
ATCCTTGCGG TAGCTGATCA CTTGTCGCAA AAACGGGTGG CCAAGGGTGA AGGCCCGCTG
TTCATGCGCG AAGTGCTCGA GGCCATGGTC ATGGCCCATG AGATACAGGG TGTGCTGGCG
CTGGAAAACG CCTTCAATCG CGTCGGCCTG GACCACGTGC TGCTGGTCAA GGTGGCCTCC
ACAGCCGTGT GCGCCAAGTT GATGGGTGCC AATCGTGAAC AACTGCTCTC GGCCTTGTCC
CACGCCTTTG TCGATGGCCA GGCGCTGCGC ACCTACCGTC ATGCACCCAA CGCCGGCTCA
CGCAAGTCGT GGGCTGCCGG TGATGCTTCC AGCCGGGGCG TACGCCTGGC CGATATCGCG
CTGCGTGGCG AGATGGGTGT GCCCGGGGTG CTGACCGCGC CGCAGTGGGG TTTTTATGAT
GTGTCGTTCA GCCATACCAA CAAGGACCTG GCGCTCAAGC CTTCTGCCCA GCAGGCGCTG
CGCATACCGC AGGCGTTGGC CAGCTACGTG ATGGAGAACG TGTTGTTCAA GGTCAGTTTC
CCGGCCGAGT TCCACGCCCA GACCGCCTGC GAAGCCGCTG TGAGCCTGCA CCCGCAAGTG
CGCAACCGTC TGCACGAAGT CGACCGTATC GTCATCACGA CCCAGGAATC AGCCATTCGC
ATCATTTCCA AGGTCGGCCC GCTGGCCAAT GCTGCTGACC GCGACCACTG CCTGCAGTAC
ATGGTGGCGG TGCCGCTTAT ATTCGGCCAT CTGGTGGCCG AGCATTACGA AGATGCCTTC
CACGCCGCCC ACCCGAGCAT CGACCGTCTG CGCGAAAAGA TGGAGGTGGT CGAGGACCCT
CGTTTCAGCC GCGAATACCT GGAGCCGGAC AAGCGCTCGA TCGCCAATGG CTTGCAGGTG
TTCTTCAAGG ATGGCAGCAG TACCGAACAG GTGGTGGTGG AATACCCGGT CGGGCACCGG
CGCCGGCGCG GGGAGGGCAT CCCCTTGCTG GAGGCCAAGT TCAGGGACAA CCTGGCGACG
CGGTTTGCGC CCCAGCGTTG CCTGGAGATT TTCGAGCTGT GCGAGGATCA ACAGCGGCTG
GAGGGTACGG CGGTACACCG GTTTGTGGAT TTGTTCGTGA CCTGA
 
Protein sequence
MSANVDLNER PDYDVVLQTL ADYVLTYRVE SPEALDTARS CLMDTLGCGL LALRFPECTK 
HLGPLVEGTV VPNGARVPGT SYRLDPVKAA WDIGCTVRWL DYNDTWLAAE WAHPSDNLGG
ILAVADHLSQ KRVAKGEGPL FMREVLEAMV MAHEIQGVLA LENAFNRVGL DHVLLVKVAS
TAVCAKLMGA NREQLLSALS HAFVDGQALR TYRHAPNAGS RKSWAAGDAS SRGVRLADIA
LRGEMGVPGV LTAPQWGFYD VSFSHTNKDL ALKPSAQQAL RIPQALASYV MENVLFKVSF
PAEFHAQTAC EAAVSLHPQV RNRLHEVDRI VITTQESAIR IISKVGPLAN AADRDHCLQY
MVAVPLIFGH LVAEHYEDAF HAAHPSIDRL REKMEVVEDP RFSREYLEPD KRSIANGLQV
FFKDGSSTEQ VVVEYPVGHR RRRGEGIPLL EAKFRDNLAT RFAPQRCLEI FELCEDQQRL
EGTAVHRFVD LFVT