| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1753 |
|---|
| Symbol | |
|---|
| ID | 6110703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 1951377 |
|---|
| End bp | 1952174 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641621548 |
|---|
| Product | TatD-related deoxyribonuclease |
|---|
| Protein accession | YP_001748626 |
|---|
| Protein GI | 170720938 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0084] Mg-dependent DNase |
|---|
| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000000148909 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTGA TCGATATCGG CGTCAACCTG ACCAATAGCA GTTTCCACGA CCAGCAGGCC
GCCATTGTCG AGCGCGCCAT CGAAGCCGGC GTAGTCCAGA TGATCCTTAC CGGCACCAGC
CTCGCGGTCA GCGAGCAGGC GCTTGAACTG TGCCAGCAGC TGGATCCCGC CAGCGAGCAC
CTGTTCGCCA CAGCCGGCGT ACACCCGCAC GACGCCAAAG CGTGGGACGC CAACAGCGAC
CAACGACTGC GCCAGTTGCT GAGTGAAGCG CGTGTGCGCG CCGTAGGCGA ATGCGGGCTG
GACTTCAACC GCGACTTCTC CCCTCGCCCA CTCCAGGAAA AAGCCTTGGA AGCTCAGTTG
GCGCTGGCCG CCGAGTTGCG TCTGCCAGTG TTCCTGCATG AGCGTGATGC CAGCGAGCGC
TTGCTGGCGA TTGTGAAGGA CTACCGTGAC CACCTGCCGG CCGCCGTGGT GCATTGCTTC
ACCGGCGAGC GTGACGCACT GTTCGCCTAC CTGGACATGG ATCTGCACAT TGGCATCACC
GGCTGGATCT GTGACGAACG CCGCGGCACG CACCTGCATC CGCTGGTGGG AAATATCCCA
CAAGGGCGCT TGATGCTGGA AAGTGATGCC CCGTACCTGC TGCCGCGCAG TCTGCGACCG
AAACCGAAGA GCGGGCGCAA CGAGCCGGCG TTTTTGCCAG AGGTGCTGCG GGAGGTAGCG
TTGCACCGGG GTGAACGAGT TGAAGAGACC GCGGCGCACA CTACCGCAAC GGCTCGGGCA
TTCTTCCAGC TGACCTGA
|
|---|
| Protein sequence | MQLIDIGVNL TNSSFHDQQA AIVERAIEAG VVQMILTGTS LAVSEQALEL CQQLDPASEH
LFATAGVHPH DAKAWDANSD QRLRQLLSEA RVRAVGECGL DFNRDFSPRP LQEKALEAQL
ALAAELRLPV FLHERDASER LLAIVKDYRD HLPAAVVHCF TGERDALFAY LDMDLHIGIT
GWICDERRGT HLHPLVGNIP QGRLMLESDA PYLLPRSLRP KPKSGRNEPA FLPEVLREVA
LHRGERVEET AAHTTATARA FFQLT
|
|---|
| |