| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1652 |
|---|
| Symbol | fadB |
|---|
| ID | 6110598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1835075 |
|---|
| End bp | 1837222 |
|---|
| Gene Length | 2148 bp |
|---|
| Protein Length | 715 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641621444 |
|---|
| Product | multifunctional fatty acid oxidation complex subunit alpha |
|---|
| Protein accession | YP_001748526 |
|---|
| Protein GI | 170720838 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTACG AAGGTAAAGC CATCACGGTT AAGGCTCTTG AAAGCGGCAT CGTCGAACTG
AAGTTCGACC TCAAGGGTGA GTCCGTCAAC AAGTTCAATC GCCTGACCCT GGACGAGCTG
CGCCAGGCTG TCGAAGCCAT CAAGGCCGAC GCCTCGGTGA AGGGCGTAAT CGTCAGCAGT
GGCAAGGACG TGTTCATCGT CGGCGCCGAC ATCACCGAGT TCGTCGACAA CTTCAAGCTG
CCCGAGGCCG AACTGGTTGC CGGCAATCTG GAAGCCAACC GCATCTTCAA CGCGTTCGAA
GACCTCGAAG TGCCGACCGT TGCCGCGATC AACGGCATCG CACTCGGCGG CGGCCTGGAA
ATGTGCCTGG CCGCCGACTA TCGGGTCATG TCCACCTCTG CCAAGATCGG CCTGCCGGAA
GTCAAGCTGG GTATCTACCC CGGCTTCGGC GGTACCGTGC GCCTGCCGCG TCTGATCGGC
TCGGACAACG CCATCGAGTG GATTGCCGCC GGCAAGGAAA ACCGCGCTGA AGACGCCCTG
AAAGTTGGCG CCGTCGACGC CGTCGTCGCC CCAGAACTGT TGCAGGCCGG GGCCCTCGAC
CTGGTCAAGC GCGCCATCAG CGGTGAGCTG GACTACAAGG CCAAGCGCCA GCCCAAGCTG
GAAAAGCTCA AGCTCAATGC CATCGAGCAG ATGATGGCCT TCGAGACTGC CAAGGGCTTC
GTCGCTGGCC AGGCCGGCCC GAACTATCCG GCCCCGGTCG AAGCGATCAA GTCGATCCAG
AAGGCCGCCA ACTTCGGTCG CGACAAGGCG CTGGAAGTCG AGGCAGCAGG CTTTGCCAAG
CTGGCCAAGA CTTCGGTTGC CCAAAGCCTG ATCGGTCTGT TCCTGAATGA TCAGGAGCTC
AAGCGCAAAG CCAAGGCCCA TGACGAAATC GCTCACGATG TTAAGCAGGC TGCCGTGCTC
GGCGCCGGCA TCATGGGTGG CGGCATCGCT TACCAGTCGG CGGTCAAGGG CACCCCGATC
CTGATGAAGG ACATCCGCGA GGAAGCCATC CAGCTGGGCC TGAACGAGGC GTCCAAGCTG
CTCGGCAACC GCGTCGAAAA AGGCCGCCTG ACTCCGGCGA AGATGGCCGA GGCACTCAAT
GCCATTCGCC CGACACTGTC CTACGGTGAT TTTGCCAACG TCGACATCGT CGTCGAGGCC
GTGGTCGAGA ACCCGAAGGT CAAGCAGGCA GTGCTGGCTG AAGTGGAAGG CCAGGTGAAA
GAGGATGCCA TCCTTGCGTC CAACACCTCG ACCATCTCCA TCAACCTGCT GGCCAAGGCG
CTCAAGCGCC CCGAGAACTT CGTCGGCATG CACTTCTTCA ACCCGGTGCA CATGATGCCG
CTGGTCGAAG TCATTCGTGG CGAGAAGTCC AGTGAAGTGG CGGTCGCCAC CACCGTGGCC
TACGCCAAGA AGATGGGCAA GAACCCGATC GTGGTCAACG ACTGCCCGGG CTTCTTGGTC
AACCGTGTCC TGTTCCCGTA CTTCGGCGGC TTTGCCAAGC TGGTCAGCGC CGGTGTCGAC
TTCGTGCGCA TCGACAAGGT CATGGAGAAG TTCGGCTGGC CGATGGGCCC GGCCTACCTG
ATGGACGTGG TCGGCATCGA CACCGGTCAC CACGGCCGCG ATGTGATGGC CGAAGGCTTC
CCGGACCGCA TGAAGGACGA ACGCCGCTCG GCCGTCGACG CCCTGTATGA GGCCAATCGC
CTGGGCCAGA AGAACGGCAA GGGTTTCTAT GCCTACGAAA CCGACAAGCG TGGCAAGCCG
AAGAAGGTCT TCGACGCCAC CGTGCTCGAT GTGCTCAAGC CGATCGTCTT CGAGCAGCGT
GAAGTCACCG ACGAAGACAT CATCAACTGG ATGATGGTCC CGCTGTGCCT GGAGACCGTG
CGCTGCCTGG AAGACGGCAT CGTCGAAACC GCTGCTGAAG CGGACATGGG CCTGGTATAC
GGCATTGGTT TCCCTCCGTT CCGTGGCGGT GCGCTGCGTT ACATCGATTC GATCGGTGTG
GCCGAATTCG TTGCCCTGGC CGACCAGTAC GCCGATCTGG GGCCGCTGTA CCACCCGACC
GCGAAGCTGC GCGAAATGGC CAAGAATGGC CAGCGCTTCT TCAGCTGA
|
|---|
| Protein sequence | MIYEGKAITV KALESGIVEL KFDLKGESVN KFNRLTLDEL RQAVEAIKAD ASVKGVIVSS
GKDVFIVGAD ITEFVDNFKL PEAELVAGNL EANRIFNAFE DLEVPTVAAI NGIALGGGLE
MCLAADYRVM STSAKIGLPE VKLGIYPGFG GTVRLPRLIG SDNAIEWIAA GKENRAEDAL
KVGAVDAVVA PELLQAGALD LVKRAISGEL DYKAKRQPKL EKLKLNAIEQ MMAFETAKGF
VAGQAGPNYP APVEAIKSIQ KAANFGRDKA LEVEAAGFAK LAKTSVAQSL IGLFLNDQEL
KRKAKAHDEI AHDVKQAAVL GAGIMGGGIA YQSAVKGTPI LMKDIREEAI QLGLNEASKL
LGNRVEKGRL TPAKMAEALN AIRPTLSYGD FANVDIVVEA VVENPKVKQA VLAEVEGQVK
EDAILASNTS TISINLLAKA LKRPENFVGM HFFNPVHMMP LVEVIRGEKS SEVAVATTVA
YAKKMGKNPI VVNDCPGFLV NRVLFPYFGG FAKLVSAGVD FVRIDKVMEK FGWPMGPAYL
MDVVGIDTGH HGRDVMAEGF PDRMKDERRS AVDALYEANR LGQKNGKGFY AYETDKRGKP
KKVFDATVLD VLKPIVFEQR EVTDEDIINW MMVPLCLETV RCLEDGIVET AAEADMGLVY
GIGFPPFRGG ALRYIDSIGV AEFVALADQY ADLGPLYHPT AKLREMAKNG QRFFS
|
|---|
| |