| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1636 |
|---|
| Symbol | |
|---|
| ID | 6110581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1816362 |
|---|
| End bp | 1818068 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641621427 |
|---|
| Product | lipid ABC transporter ATPase/inner membrane protein |
|---|
| Protein accession | YP_001748510 |
|---|
| Protein GI | 170720822 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.663719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCAT ACCGTCGCCA AGCGCTGTTG GCGTTGCTGG CTCTGGTAGT GACCGCCGGC
ATTACCCTGT CCATGGGTCA AGGCATCCGC CTGTTGGTGG ACCAGGGGTT CATGACCCGT
TCGGCGCAAC AGCTCAATCA GACCATCGGC CTGTTCCTGC TGTTGGTGCT GGCGTTGGCG
GCAGGGACAT TCAGCCGCTT CTATCTGGTT TCCTGGATCG GTGAGCGCTG CGTGGCCGAT
ATTCGCCGCG CCGTGTTCGA TCACCTTGTA GGCCTGCACC CTGGCTTTTT CGAAGACAAC
CGCAGCTCGG AAATCCAGTC CCGACTGACC GCCGATACCA CATTGCTGCA GGCGGTCATC
GGCTCGTCAC TGTCGATGTT CCTGCGCAAC GCCCTGATGG TGATCGGCGG CGTTGTGCTG
CTTTTCATCA CCAACCCCAA ACTCACCAGT ATCGTCGTGG TGGCCCTGCC GCTGGTGCTC
GCGCCGATCC TGCTGTTTGG CCGGCGCGTG CGCAGCCTGT CGCGGCAGAG CCAGGACCGT
GTGGCGGATG TGGGCAGCTA TGTGGCCGAG ACGCTGGGGC AGATCAAGAC CGTGCAGGCC
TACAACCACC AGGCACTCGA CCGCCAGTTG TTCGCTGGAA CGGTCGAGGC GGCCTTCGCC
GTGGCGCGCC AGCGGATCGC ACAACGGGCC TGGTTGATCA CCCTGGTCAT CGTGCTGGTG
CTGGGCGCGG TGGGGGTGAT GTTGTGGGTC GGCGGCATGG ATGTAATCGC CGGGCGCATC
TCCGCAGGCG AATTGGCAGC CTTCGTGTTC TACAGCCTGA TCGTCGGTAG TGCCTTCGGT
ACTCTGAGCG AAGTCATCGG CGAACTGCAG CGCGCCGCCG GTGCAGCCGA GCGTATCGCC
GAACTGCTGG CAGCGCGCAG CAGCATTCTA GAGACCGAGC AGCCGTTTGT GCTGGATCGG
CAGCGCGCTG GTGGGCGTAT CGAGCTGAAG AACCTGGTAT TTGCTTACCC TTCCAGGCCA
TCGGTTGCCG CCATCGACAA CCTGAACCTG GTCATCGAGC CAGGCCAGAC CGTGGCGCTG
GTGGGGCCAT CCGGCGCGGG CAAATCGACA TTGTTCGACT TGCTGTTGCG CTTCTACGAC
CCCCAGGAGG GGGGCATCCT TCTGGATAAT CAGCCAATCA CCAGCCTGGC GTTGGGCGAA
CTACGCCGCC AGTTCGCACT GGTGGCGCAG AACCCCTCGC TGTTTCGCGG TACGGTCGAG
GCCAACATCC GCTATGGGCA CCCGGAGGCC AGCTTGGCCG AGGTTGAGGC GGCCGCGCGT
GGCGCACATG CCGATGAGTT CATCCGGCAA CTGCCGCAGG GTTACCAGAC ACTGCTGGGC
GAGGGTGGTA TTGGCCTGTC GGGCGGGCAG CGGCAGCGTC TGGCGATTGC GCGGGCGTTG
CTGGTGGATG CGCCGATCCT GCTGCTCGAC GAAGCCACCA GCGCCCTCGA TGCGCAGAGC
GAGCACTTGA TCCAGCAGGC GCTTGCGAGC CTGATGGCGG GCCGCACTAC GCTGGTCATC
GCCCATCGCT TGGCCACAGT GCAGCATGCT GATCGCATCG CGGTCATCGA CAAGGGTCGC
CTGGTGGCAG TGGGGACCCA CCGTGAACTG ATCGAAAAGA GCCCGCTGTA CGCCAGGCTG
GCCTCGCTGC AGTTCAACGC AGGTTGA
|
|---|
| Protein sequence | MRPYRRQALL ALLALVVTAG ITLSMGQGIR LLVDQGFMTR SAQQLNQTIG LFLLLVLALA
AGTFSRFYLV SWIGERCVAD IRRAVFDHLV GLHPGFFEDN RSSEIQSRLT ADTTLLQAVI
GSSLSMFLRN ALMVIGGVVL LFITNPKLTS IVVVALPLVL APILLFGRRV RSLSRQSQDR
VADVGSYVAE TLGQIKTVQA YNHQALDRQL FAGTVEAAFA VARQRIAQRA WLITLVIVLV
LGAVGVMLWV GGMDVIAGRI SAGELAAFVF YSLIVGSAFG TLSEVIGELQ RAAGAAERIA
ELLAARSSIL ETEQPFVLDR QRAGGRIELK NLVFAYPSRP SVAAIDNLNL VIEPGQTVAL
VGPSGAGKST LFDLLLRFYD PQEGGILLDN QPITSLALGE LRRQFALVAQ NPSLFRGTVE
ANIRYGHPEA SLAEVEAAAR GAHADEFIRQ LPQGYQTLLG EGGIGLSGGQ RQRLAIARAL
LVDAPILLLD EATSALDAQS EHLIQQALAS LMAGRTTLVI AHRLATVQHA DRIAVIDKGR
LVAVGTHREL IEKSPLYARL ASLQFNAG
|
|---|
| |