| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1616 |
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| Symbol | |
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| ID | 6110561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1792448 |
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| End bp | 1794838 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641621407 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001748490 |
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| Protein GI | 170720802 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.000405684 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGAAGT ATGGCGTGCG TGCGAAGGTG GTGGGCCTGT GCAGCGAGGC GATGGCTGCT
TGGGCAGTGG CGTTGGTGGC GTTGGTGGCC GGCAGCTTGC TGTCGATTGC CCTGGCGCTG
GCCACGCATG CGTTTTACAA GCAGCAACTG CGCCAGCGCT TCGAGCTGCT GGCCAGCGAG
CGCTATAGCC GTATCGCCGA GCGCTTCGAT GACCAGGAGC AGCGCCTGGA CAGCTTGCGG
CGCTTTTTCA ACTTTTCCAA TGACATCACC CCACGCGAAT TCGACGGCTA CGCCCGCCCC
CTGCTGCGTC GCACCCAGGC TTACTCATGG GCACCGCGGG TCGAAGGCGC TCAGCGGCGT
GACTTCGAGC GCCAGGCCAG TGCCGCCTTG GGGCAGGCCT ACCTGATCCG TGACCTGGAC
GAGCGGGGTA ATTGGCATCC GGCGCCGCCG CGTGATCACT ACTTCCCCGT GCTTTACACC
CAGGCCACCC AGATGCAGGG GCAACCCTAC GGGCTGGACC TGCGCGGCCA GGCGGTACGT
GACCAGACCC TGATGCGTGC CTTGGAGCCC GGCAGCATGG CAGTGTCGGC GCCGATTGAC
ATGATCAGTG TGGCGCCCGG CTACGCCCGC GGGTTGTTGA TGGTGGCGCC GGTGTTCTAC
ACCGCGCAGG CTGATAGCCC CTCAGGGTAT GTCATGGCGC TGCTGAACCT GCGGCAACTG
ATCACCGACG GCCTGCCGGC AATTGCCGAG GACAACCTGG TGGTACGGAT CGTCGACCCA
AGTGGGCGCG ATGGCCATGA ACTGTTGTTC GACTCGCAGA ACCCGGCCGC GCCGTTGGCG
TTGGTCACCA CGCAGCTGTT ACATCTGGCC GACCATCATT TCCAGCTTGA TATCCGCCCA
AGCCAGGTGT TCATGCAGGG CAACCGCTCC TCAGCGGCGC TGGCGGTGGG CTTGCTCGGT
GGCCTGCTGA GCCTGTTGCT CAGTGCCTTG CTGTACAGCC TGTTCGGCCA GCGGCAACGT
GCGCTCAAGT TGGTAGAGCA GCGCACCGCT GAGTTGCGCG TCAGTGAGCA GTCGTTGCGC
GAGACGCATA ATCAGCTGCG CAGTGTGCTC GATGCCGCTA CCCAGGTCGC TATCATCGCG
ACCAGCCTGA AGGGTGTGGT CAGCACCTTC AATGCCGGTG CCGAACGCAT GCTTGGCTAC
GCGGCCAGCG ACGCGGTCGG GAAACTGCAA CTGGAACACC TGGTCCTGCC CGAGGAGCTC
AGCCTGCGCG CCCATGCCCT GAGCCTGCGC TACGGGCGTC ACATTGACGG TGGCCAGGCG
ATGTTCGCCG AGACCCTGCA GGAGGGCAGC GCGCAGCCAG GCGAGTGGAC CTTGGTGCGC
AAGGACGGCA GCCAGCTGTT GGCCAACATG CTGGTGACCG CAGTGCTCGA CGAACAGGGG
CTATGGGTGG GTTACCTGGC AATTTGCATT GATGTCACCG AGCAGCGTCG CGTGCATGAG
GCGCTGGCAA TGCGTGATCG GCTGCTGGAG AAGCTCAGTG CCGAGGTGCC GGGCGGCATT
TATCAGTATC GCCTCGACGC CAACGGCCAT TCCTGTTTCC CCTATGCCAG CCAGGGGCTG
TTCGATATCT ACGAGATCGA CTTGCAGTTG CTGCATGAGG ACGCCACGGT GGTGTTCGAG
CGTATTCATC CCGATGACCT GGAGCGTGTG CGACGCTCCG TGCACCACTC GGCCGAACAC
TTGTCTCCTT GGCGTGAAGA GTACCGTGTG TGCCTGCCCA AATCCGGGCT GCGCTGGGTG
CGCGGGGAGG CGACGCCAGA GGTTGGTGAA GACGGTTGCA CGCTCTGGCA TGGTTACCTG
ACCGACATTT CCGACCTCAA GGGCGTGGAG GAGGATTTGC GTACGCTGTC GGTGACCGAT
GCCCTGACCG GTATCCACAA CCGCCGCTAC TTCCAGGAGC GGTTGAAGGC CGAATTGGAC
CGCGCCCAGC GTGATGATCA GGAACTGGCA GTGATCATGC TCGACATCGA TCACTTCAAG
AGGATCAACG ACCAGTACGG CCATGCCGTA GGGGATCATG TATTGCGCAG CCTCTGCCAG
CGTATCGGCC AGCGTCTGCG GCGTACGGAC GTATTCTGCC GGCTTGGTGG GGAGGAGTTC
ATGGTGCTTT GCCCTGGGAG CAATGCTGAA CAGGCGCGGC TCCTGGCGAT GGAACTATGG
CAAGGGGTGC GCAATTTGCC TGTCGACGGG GTTGGCAAAG TGACTGCAAG TTTTGGCGTG
GCCGGATGGC GGCCGGGGGA GGGGGCCGAT GCCTTGCTGC TGCGGGCTGA TGCCGGCGTC
TATGCGGCCA AGCAGGCAGG CAGGGACCGT GTCGAGGCAG AGTTGAACTG A
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| Protein sequence | MSKYGVRAKV VGLCSEAMAA WAVALVALVA GSLLSIALAL ATHAFYKQQL RQRFELLASE
RYSRIAERFD DQEQRLDSLR RFFNFSNDIT PREFDGYARP LLRRTQAYSW APRVEGAQRR
DFERQASAAL GQAYLIRDLD ERGNWHPAPP RDHYFPVLYT QATQMQGQPY GLDLRGQAVR
DQTLMRALEP GSMAVSAPID MISVAPGYAR GLLMVAPVFY TAQADSPSGY VMALLNLRQL
ITDGLPAIAE DNLVVRIVDP SGRDGHELLF DSQNPAAPLA LVTTQLLHLA DHHFQLDIRP
SQVFMQGNRS SAALAVGLLG GLLSLLLSAL LYSLFGQRQR ALKLVEQRTA ELRVSEQSLR
ETHNQLRSVL DAATQVAIIA TSLKGVVSTF NAGAERMLGY AASDAVGKLQ LEHLVLPEEL
SLRAHALSLR YGRHIDGGQA MFAETLQEGS AQPGEWTLVR KDGSQLLANM LVTAVLDEQG
LWVGYLAICI DVTEQRRVHE ALAMRDRLLE KLSAEVPGGI YQYRLDANGH SCFPYASQGL
FDIYEIDLQL LHEDATVVFE RIHPDDLERV RRSVHHSAEH LSPWREEYRV CLPKSGLRWV
RGEATPEVGE DGCTLWHGYL TDISDLKGVE EDLRTLSVTD ALTGIHNRRY FQERLKAELD
RAQRDDQELA VIMLDIDHFK RINDQYGHAV GDHVLRSLCQ RIGQRLRRTD VFCRLGGEEF
MVLCPGSNAE QARLLAMELW QGVRNLPVDG VGKVTASFGV AGWRPGEGAD ALLLRADAGV
YAAKQAGRDR VEAELN
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