Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1616 |
Symbol | |
ID | 6110561 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 1792448 |
End bp | 1794838 |
Gene Length | 2391 bp |
Protein Length | 796 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641621407 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001748490 |
Protein GI | 170720802 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.000405684 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCGAAGT ATGGCGTGCG TGCGAAGGTG GTGGGCCTGT GCAGCGAGGC GATGGCTGCT TGGGCAGTGG CGTTGGTGGC GTTGGTGGCC GGCAGCTTGC TGTCGATTGC CCTGGCGCTG GCCACGCATG CGTTTTACAA GCAGCAACTG CGCCAGCGCT TCGAGCTGCT GGCCAGCGAG CGCTATAGCC GTATCGCCGA GCGCTTCGAT GACCAGGAGC AGCGCCTGGA CAGCTTGCGG CGCTTTTTCA ACTTTTCCAA TGACATCACC CCACGCGAAT TCGACGGCTA CGCCCGCCCC CTGCTGCGTC GCACCCAGGC TTACTCATGG GCACCGCGGG TCGAAGGCGC TCAGCGGCGT GACTTCGAGC GCCAGGCCAG TGCCGCCTTG GGGCAGGCCT ACCTGATCCG TGACCTGGAC GAGCGGGGTA ATTGGCATCC GGCGCCGCCG CGTGATCACT ACTTCCCCGT GCTTTACACC CAGGCCACCC AGATGCAGGG GCAACCCTAC GGGCTGGACC TGCGCGGCCA GGCGGTACGT GACCAGACCC TGATGCGTGC CTTGGAGCCC GGCAGCATGG CAGTGTCGGC GCCGATTGAC ATGATCAGTG TGGCGCCCGG CTACGCCCGC GGGTTGTTGA TGGTGGCGCC GGTGTTCTAC ACCGCGCAGG CTGATAGCCC CTCAGGGTAT GTCATGGCGC TGCTGAACCT GCGGCAACTG ATCACCGACG GCCTGCCGGC AATTGCCGAG GACAACCTGG TGGTACGGAT CGTCGACCCA AGTGGGCGCG ATGGCCATGA ACTGTTGTTC GACTCGCAGA ACCCGGCCGC GCCGTTGGCG TTGGTCACCA CGCAGCTGTT ACATCTGGCC GACCATCATT TCCAGCTTGA TATCCGCCCA AGCCAGGTGT TCATGCAGGG CAACCGCTCC TCAGCGGCGC TGGCGGTGGG CTTGCTCGGT GGCCTGCTGA GCCTGTTGCT CAGTGCCTTG CTGTACAGCC TGTTCGGCCA GCGGCAACGT GCGCTCAAGT TGGTAGAGCA GCGCACCGCT GAGTTGCGCG TCAGTGAGCA GTCGTTGCGC GAGACGCATA ATCAGCTGCG CAGTGTGCTC GATGCCGCTA CCCAGGTCGC TATCATCGCG ACCAGCCTGA AGGGTGTGGT CAGCACCTTC AATGCCGGTG CCGAACGCAT GCTTGGCTAC GCGGCCAGCG ACGCGGTCGG GAAACTGCAA CTGGAACACC TGGTCCTGCC CGAGGAGCTC AGCCTGCGCG CCCATGCCCT GAGCCTGCGC TACGGGCGTC ACATTGACGG TGGCCAGGCG ATGTTCGCCG AGACCCTGCA GGAGGGCAGC GCGCAGCCAG GCGAGTGGAC CTTGGTGCGC AAGGACGGCA GCCAGCTGTT GGCCAACATG CTGGTGACCG CAGTGCTCGA CGAACAGGGG CTATGGGTGG GTTACCTGGC AATTTGCATT GATGTCACCG AGCAGCGTCG CGTGCATGAG GCGCTGGCAA TGCGTGATCG GCTGCTGGAG AAGCTCAGTG CCGAGGTGCC GGGCGGCATT TATCAGTATC GCCTCGACGC CAACGGCCAT TCCTGTTTCC CCTATGCCAG CCAGGGGCTG TTCGATATCT ACGAGATCGA CTTGCAGTTG CTGCATGAGG ACGCCACGGT GGTGTTCGAG CGTATTCATC CCGATGACCT GGAGCGTGTG CGACGCTCCG TGCACCACTC GGCCGAACAC TTGTCTCCTT GGCGTGAAGA GTACCGTGTG TGCCTGCCCA AATCCGGGCT GCGCTGGGTG CGCGGGGAGG CGACGCCAGA GGTTGGTGAA GACGGTTGCA CGCTCTGGCA TGGTTACCTG ACCGACATTT CCGACCTCAA GGGCGTGGAG GAGGATTTGC GTACGCTGTC GGTGACCGAT GCCCTGACCG GTATCCACAA CCGCCGCTAC TTCCAGGAGC GGTTGAAGGC CGAATTGGAC CGCGCCCAGC GTGATGATCA GGAACTGGCA GTGATCATGC TCGACATCGA TCACTTCAAG AGGATCAACG ACCAGTACGG CCATGCCGTA GGGGATCATG TATTGCGCAG CCTCTGCCAG CGTATCGGCC AGCGTCTGCG GCGTACGGAC GTATTCTGCC GGCTTGGTGG GGAGGAGTTC ATGGTGCTTT GCCCTGGGAG CAATGCTGAA CAGGCGCGGC TCCTGGCGAT GGAACTATGG CAAGGGGTGC GCAATTTGCC TGTCGACGGG GTTGGCAAAG TGACTGCAAG TTTTGGCGTG GCCGGATGGC GGCCGGGGGA GGGGGCCGAT GCCTTGCTGC TGCGGGCTGA TGCCGGCGTC TATGCGGCCA AGCAGGCAGG CAGGGACCGT GTCGAGGCAG AGTTGAACTG A
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Protein sequence | MSKYGVRAKV VGLCSEAMAA WAVALVALVA GSLLSIALAL ATHAFYKQQL RQRFELLASE RYSRIAERFD DQEQRLDSLR RFFNFSNDIT PREFDGYARP LLRRTQAYSW APRVEGAQRR DFERQASAAL GQAYLIRDLD ERGNWHPAPP RDHYFPVLYT QATQMQGQPY GLDLRGQAVR DQTLMRALEP GSMAVSAPID MISVAPGYAR GLLMVAPVFY TAQADSPSGY VMALLNLRQL ITDGLPAIAE DNLVVRIVDP SGRDGHELLF DSQNPAAPLA LVTTQLLHLA DHHFQLDIRP SQVFMQGNRS SAALAVGLLG GLLSLLLSAL LYSLFGQRQR ALKLVEQRTA ELRVSEQSLR ETHNQLRSVL DAATQVAIIA TSLKGVVSTF NAGAERMLGY AASDAVGKLQ LEHLVLPEEL SLRAHALSLR YGRHIDGGQA MFAETLQEGS AQPGEWTLVR KDGSQLLANM LVTAVLDEQG LWVGYLAICI DVTEQRRVHE ALAMRDRLLE KLSAEVPGGI YQYRLDANGH SCFPYASQGL FDIYEIDLQL LHEDATVVFE RIHPDDLERV RRSVHHSAEH LSPWREEYRV CLPKSGLRWV RGEATPEVGE DGCTLWHGYL TDISDLKGVE EDLRTLSVTD ALTGIHNRRY FQERLKAELD RAQRDDQELA VIMLDIDHFK RINDQYGHAV GDHVLRSLCQ RIGQRLRRTD VFCRLGGEEF MVLCPGSNAE QARLLAMELW QGVRNLPVDG VGKVTASFGV AGWRPGEGAD ALLLRADAGV YAAKQAGRDR VEAELN
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