| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1598 |
|---|
| Symbol | |
|---|
| ID | 6110543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1768195 |
|---|
| End bp | 1773060 |
|---|
| Gene Length | 4866 bp |
|---|
| Protein Length | 1621 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641621389 |
|---|
| Product | NAD-glutamate dehydrogenase |
|---|
| Protein accession | YP_001748472 |
|---|
| Protein GI | 170720784 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000000510782 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTCT TCACCGCAGC CAGCAAAGCC GACTTCCAGC ATCAACTGCA AGCGGCCCTG
GCGCAGCACA TCAGCGAACA GTCACTGCCA CAAGTGGCGC TGTTCGCCGA GCAGTTCTTC
GGCATCATTT CCATGGACGA ACTCACCCAG CGCAGGCTGT CGGACCTGGC CGGCTGTACC
CTTTCCGCCT GGCGCATCAT CGAGCGCTTC GACCCCGAGC ACCCGCAGGT GCGGGTGTAC
AACCCCGATT ACGAGCGCAA TGGCTGGCAG TCGACCCACA CCGTGGTCGA GGTGCTGCAC
CATGACCTGC CGTTTTTGGT GGATTCTGTA CGTACCGAGC TCAACCGCCG CGGCTACAGC
ATTCACACCC TGCAAACCAC CGTGCTGAGT GTGCGCCGTG ACGCCAAGGG CAATCTGCTC
GAACTGCTGC CCAAGGGTAC CCAGGGCGAG GGTGTGCGCC ATGAATCGCT GATGTACCTG
GAGATCGACC GCTGCGCCAA TGCTGCCGAA TTGACGGTGC TCACCCGTGA AATCGAGCAG
GTGCTGGCCG AGGTGCGGGT GGCGGTGGCC GATTTCGAAC CGATGAAAGC CAAGCTGCGG
GAAGTCATGG CGCAGGTGGA GCAAACCGCA TTTGCGCCGG CGCACCATGA AAAGGGTGAG
GTCAAGGCGT TCCTCGAGTG GCTGCTGGAC AACCACTTCA CCTTCCTCGG TTATGAAGAG
TTCACCGTGC AGGCCGACAG CGCCGGCGGC CAGATGGTCT ACGACGAGCA GTCGTTCCTG
GGCTTGCCGC GCCGCCTGCG TGTGGGCCTG ACGCCTGAAG AGCTGCGTAT CGAAGACTAC
GCCGTGGCTT ACCTGGCAGA ACCGCTGCTG TTGTCGTTCG CCAAGGCTGC ACTGCCCAGC
CGGGTCCACC GCCCGGCCTA CCCGGATTAC GTCTCGATCC GCCAGCTGGA CGCCGATGGC
AAGGTGCTCA AGGAGCACCG TTTCATGGGC CTTTACACCT CGTCGGTGTA CGGCGAGAGC
GTGCATGCCA TTCCTTATAT CCGGGTCAAG GTCGCCGAGG TCGAGCGCCG CTCCGGCTTC
GACGCCAAGG CACACCTGGG CAAGGAACTG GCCCAGGTAC TCGAAGTGCT GCCACGCGAC
GACCTGTTCC AGACTCCGAT CGACGAGCTG TTCAGCACGG TGATGTCGAT CGTGCAGATC
CAGGAGCGCA ACAAGATCCG TGTGTTCCTG CGCAAGGACC CGTACGGGCG CTTCTGCTAT
TGCCTGGCCT ACGTGCCACG GGAAATCTAT TCCACCGAAG TGCGGCAGAA GATCCAGCAG
GTGCTGATGG AGCGCCTGAA GGCCAGCGAC TGCGAGTTCT GGACGTTCTT CTCCGAATCG
GTGCTGGCCC GCGTGCAGCT GATTTTGCGC GTCGATCCGA AGAACCGTAT CGCCATCGAC
CCGCAGCAAC TGGAAAACGA AGTGATCCAG GCCTGTCGCT CGTGGCATGA CGACTACGCC
GCGCTGGTGG TGGAGAACTT CGGTGAAGCC CAGGGCACCA ACATTCTCGC CGATTTCCCC
AAAGGTTTCC CGGCCGGCTA CCGTGAGCGC TTTGCCGCCC ATTCGGCGGT GGTCGACCTG
CAACATGTGC TAGCCCTGTC CGAAAGCAAG CCGCTGGCGA TGAGCTTCTA CCAGCCGCTG
ACGCGCCTGG GCGAACGCTT GCTGCACTGC AAGCTGTACC ACGCCGACAC GCCATTGGCG
TTGTCGGACG TGCTGCCGAT CCTGGAAAAT CTTGGCCTGC GCGTGCTGGG CGAGTTCCCC
TATCGCTTGC GCCACGCCAG TGGTCGTGAA TACTGGATCC ACGATTTCGC CTTCACCTAC
AGCGAAGGCT TGAGCCTGGA CATCCAGCAA CTCAACGACG TGCTCCAGGA CGCGTTCATC
CATATCGTCC AGGGCGATGC CGAGAATGAC GCGTTCAACC GCCTGGTGCT CACTGCCGGC
CTGCCATGGC GCGACGTGGC GCTGCTGCGC GCCTATGCCC GCTACCTCAA GCAGATCCGC
CTGGGCTTCG ACCTTGGCTA CATCGCCAGC ACCCTGAACA ACCACACCGA CATCGCCCGT
GAGCTGACCC GGTTGTTCAA GACCCGCTTC TACCTGGCGC GCAAGCTCAC TGCCGATGAC
CTGGACGACA AGCAGCAACG TCTGGAACAA GCCATCCTCA GCGCCCTGGA CGATGTCCAG
GTGCTCAACG AGGACCGCAT CCTGCGCCGC TATCTGGACC TGATCAAGGC CACCCTACGC
ACCAACTTCT ACCAGCCTGA TGCTAACGGC CAGAGCAAGT CGTACTTCAG CTTCAAGTTC
AACCCCAAGC TGATCCCCGA GCTGCCCAAG CCGGTACCCA AGTTCGAGAT CTTCGTCTAT
TCGCCTCGGG TCGAGGGTGT GCACCTGCGC TTCGGCAATG TTGCGCGCGG TGGCCTGCGC
TGGTCGGACC GTGAAGAGGA CTTCCGTACC GAGGTGCTTG GGCTGGTCAA AGCCCAGCAA
GTGAAGAACT CGGTAATCGT GCCGGTCGGT GCCAAAGGCG GCTTCCTGCC GCGGCGTTTG
CCGCTGGGCG GCACGCGTGA CGAAATCGCC GCCGAAGGCG TGGCCTGCTA CCGCATTTTC
ATCTCGGGCC TGCTCGACAT CACCGACAAC CTCAAGGACG GCGGCGTGGT GCCACCGGCC
AACGTGGTGC GTCACGATGA CGATGACCCG TACCTGGTGG TGGCGGCCGA CAAGGGCACC
GCGACCTTCT CCGACATCGC CAACGGCATC GCCATCGATT ACGGCTTCTG GCTGGGCGAT
GCCTTCGCCT CGGGTGGCTC TGCCGGCTAC GACCACAAGA AGATGGGCAT TACCGCCCGT
GGTGCCTGGG TGGGCGTGCA GCGCCACTTC CGCGAGCGCG GCATCAATGT GCAGCAGGAC
CCGATCACCG TCATCGGCGT CGGTGACATG GCCGGTGACG TGTTCGGCAA CGGCCTGCTG
ATGTCCGACA AGCTGCAGCT GGTAGCGGCG TTCAACCATC TGCACATCTT CATCGACCCG
AACCCGGACC CGGCCAGCAG CTTCGCCGAG CGCCAGCGGC TGTTCGACTT GCCGCGTTCG
GCCTGGAGCG ATTACGACAC CAGCATCATG TCCGAAGGCG GCGGGATCTT CCCGCGCAGT
GCCAAGAGCA TCGCCATCAC TGCGCAAATG AAGGAACGCT TCGCCATCGA GGCCGACCGG
CTGACGCCGA CCGAGCTGCT GCATGCATTG CTCAAGGCGC CGGTAGACCT GCTGTGGAAT
GGGGGCATCG GTACCTACGT CAAGGCCAGC AGCGAAAGCC ACGCCGATGT CGGCGACAAG
GCCAATGACG CGCTGCGGGT CAACGGCAAC GAACTGCGCT GCAAGGTGGT GGGCGAGGGC
GGCAACCTCG GCATGACCCA GCTTGGCCGT GTCGAGTTCG GCCTGAACGG TGGTGCCACC
AATACCGACT TCATCGACAA CGCTGGTGGC GTGGACTGCT CCGACCACGA GGTCAACATC
AAGATCCTGC TCAACGAAGT GGTGCAGGGT GGCGACATGA CCGAGAAGCA GCGCAACCAG
TTGCTTGGCA GCATGACCGA TGAAGTGGGC GGGCTGGTGC TGGGCAACAA CTACAAGCAG
ACCCAGGCGC TTTCGTTGGC GGCGCGTCGC GCCCGCGAGC GGATCGCCGA GTACAAGCGC
CTGATGGCCG ACCTCGAGAG CCGTGGCAAG CTGGACCGTG CCATCGAGTT CTTGCCGACC
GAAGAGCAAT TGGCCGAGCG CCTGGCGGCA GGCCAGGGCC TGACTCGTGC CGAGCTGTCC
GTGTTGATTT CCTACAGCAA GATCGACCTC AAAGAGCAGT TGCTCAAGTC GCTGGTGCCT
GACGACGACT ACCTGACCCG CGACATGGAA ACCGCTTTCC CGCCGTCGCT GGTCAGCAAG
TTTGCCGAAG CCATGCGTCG CCATCGCCTC AAGCGCGAGA TCGTCAGCAC CCAGATCGCC
AACGACCTGG TCAACAACAT GGGCATCACC TTCGTCCAGC GGCTCAAAGA GTCGACCGGC
ATGAGCCCGG CCAACGTGGC CGGGGCCTAT GTGATCGTGC GTGACATCTT CCATCTGCCG
CACTGGTTCC GCCAGATAGA GGCGTTGGAC TACCAGGTAC CGGCAGAAAT CCAGCTGGCC
CTGATGGACG AACTGATGCG CTTGGGCCGC CGTGCGACCC GTTGGTTCCT GCGCAGCCGG
CGCAACGAGC AGGACGCCGG GCGCGATACT GCCCACTTCG GGCCGAAAAT CGCCCAGCTG
GGGCTCAAAC TCGACGAACT GCTGGAGGGC CCGACCCGCG AACGCTGGAT GGTCCGTTAC
CAGAGCTTCG TCGATGCCGG CGTACCGGAG TTGCTCGCAC GCATGGTGGC AGGTACCAGC
CACCTGTACA CGTTGTTGCC GATCATCGAA GCGGCGGACG TGACCGGGCA TGAGCCGGCC
CAGGTTGCCA AGGCGTTCTT CGCCGTGGGC AGTGCGCTGG ACTTGACCTG GTACTTGCAG
GAAATCAGCA ACCTGCCGGT CGAGAACAAC TGGCAGGCCC TGGCCCGTGA GGCGTTCCGC
GACGATATCG ACCTGCAGCA ACGGGCCATC ACCATCTCGG TGCTGCAGAT GGTTGATGCC
CCGCAAGACA TGGATGCCCG TGTGGCGCTG TGGGCCGAGC AGCATCGGGT CATGGTCGAG
CGCTGGCGCG CCATGCTCGA CGACCTGCGC AATGCGACTG GTACCGACTA TGCGATGTAT
GCGGTGGCCA ACCGCGAGCT GGTCGACCTG GCGATGAGCG GGCAGGCGGT GGCAGTGCCG
TCCTGA
|
|---|
| Protein sequence | MAFFTAASKA DFQHQLQAAL AQHISEQSLP QVALFAEQFF GIISMDELTQ RRLSDLAGCT
LSAWRIIERF DPEHPQVRVY NPDYERNGWQ STHTVVEVLH HDLPFLVDSV RTELNRRGYS
IHTLQTTVLS VRRDAKGNLL ELLPKGTQGE GVRHESLMYL EIDRCANAAE LTVLTREIEQ
VLAEVRVAVA DFEPMKAKLR EVMAQVEQTA FAPAHHEKGE VKAFLEWLLD NHFTFLGYEE
FTVQADSAGG QMVYDEQSFL GLPRRLRVGL TPEELRIEDY AVAYLAEPLL LSFAKAALPS
RVHRPAYPDY VSIRQLDADG KVLKEHRFMG LYTSSVYGES VHAIPYIRVK VAEVERRSGF
DAKAHLGKEL AQVLEVLPRD DLFQTPIDEL FSTVMSIVQI QERNKIRVFL RKDPYGRFCY
CLAYVPREIY STEVRQKIQQ VLMERLKASD CEFWTFFSES VLARVQLILR VDPKNRIAID
PQQLENEVIQ ACRSWHDDYA ALVVENFGEA QGTNILADFP KGFPAGYRER FAAHSAVVDL
QHVLALSESK PLAMSFYQPL TRLGERLLHC KLYHADTPLA LSDVLPILEN LGLRVLGEFP
YRLRHASGRE YWIHDFAFTY SEGLSLDIQQ LNDVLQDAFI HIVQGDAEND AFNRLVLTAG
LPWRDVALLR AYARYLKQIR LGFDLGYIAS TLNNHTDIAR ELTRLFKTRF YLARKLTADD
LDDKQQRLEQ AILSALDDVQ VLNEDRILRR YLDLIKATLR TNFYQPDANG QSKSYFSFKF
NPKLIPELPK PVPKFEIFVY SPRVEGVHLR FGNVARGGLR WSDREEDFRT EVLGLVKAQQ
VKNSVIVPVG AKGGFLPRRL PLGGTRDEIA AEGVACYRIF ISGLLDITDN LKDGGVVPPA
NVVRHDDDDP YLVVAADKGT ATFSDIANGI AIDYGFWLGD AFASGGSAGY DHKKMGITAR
GAWVGVQRHF RERGINVQQD PITVIGVGDM AGDVFGNGLL MSDKLQLVAA FNHLHIFIDP
NPDPASSFAE RQRLFDLPRS AWSDYDTSIM SEGGGIFPRS AKSIAITAQM KERFAIEADR
LTPTELLHAL LKAPVDLLWN GGIGTYVKAS SESHADVGDK ANDALRVNGN ELRCKVVGEG
GNLGMTQLGR VEFGLNGGAT NTDFIDNAGG VDCSDHEVNI KILLNEVVQG GDMTEKQRNQ
LLGSMTDEVG GLVLGNNYKQ TQALSLAARR ARERIAEYKR LMADLESRGK LDRAIEFLPT
EEQLAERLAA GQGLTRAELS VLISYSKIDL KEQLLKSLVP DDDYLTRDME TAFPPSLVSK
FAEAMRRHRL KREIVSTQIA NDLVNNMGIT FVQRLKESTG MSPANVAGAY VIVRDIFHLP
HWFRQIEALD YQVPAEIQLA LMDELMRLGR RATRWFLRSR RNEQDAGRDT AHFGPKIAQL
GLKLDELLEG PTRERWMVRY QSFVDAGVPE LLARMVAGTS HLYTLLPIIE AADVTGHEPA
QVAKAFFAVG SALDLTWYLQ EISNLPVENN WQALAREAFR DDIDLQQRAI TISVLQMVDA
PQDMDARVAL WAEQHRVMVE RWRAMLDDLR NATGTDYAMY AVANRELVDL AMSGQAVAVP
S
|
|---|
| |