Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1574 |
Symbol | |
ID | 6110519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 1739129 |
End bp | 1740007 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641621365 |
Product | rhomboid family protein |
Protein accession | YP_001748448 |
Protein GI | 170720760 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.227659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATATCG TCGAAGTGAT GCGCCTGCCG CTGTCGGTCG ACCTCAGCGG CTTCGTGCAC CTGCTGCAAC GCCTGCAGGT GCCGCACCGG GTCAGCGAAG AGGGCGAAGC CCAGGTGCTC TGGGCGCCGG AAACCATGGC CGCCGATGTC CTTCAACTCT ACCAGCGCTA CCCAGACGGC AACGCTGATG TCGAGCTTGC GCAGGCCCCT GCGCAAGGCG ACTTGCCGGC GAAAGGGCCG ACACTGGCCG AGCAGGCAAA AGCCTGCAAG GTCACCGCCG CCGTCCTCTT CCTGTGCCTG ATCGTCGCCG GCCTTACCCG CCTGGGCGAC AACCTCACCA CCATCAGCTG GTTCACCTTC CTCGACTACC GCGTCCAGGG TGAATACCTG CATTTCACGC CGCTGGCTCA GGGCCTCGCC GAAGGCCAAT GGTGGCGCCT GGTGTCGCCG ATGCTGCTGC ACTTTGGCGT ACTGCACCTG GCCATGAACG GCATGTGGTA CTGGGAACTG GGCAAGCGTA TCGAACTGCG CCAGGGCCCT TGGTTGCTGG CTGGCCTGAC CTTGCTGTTC AGCCTGGTGT CCAACCTGGC CCAGCACTAC ACCAGTGGCC CGAGCCTGTT CGGCGGCCTG TCGGGGGTGC TGTACGGCTT GCTCGGCCAT GTCTGGCTGT ACCAGTGGCT GGCGCCCAAC CCACACTTCA GCCTGCCCAA GGGTGTGCTG GTGATGATGC TCATCTGGCT GGTCATCTGC CTGACCGGTG TGGTCGGCCA ACTCGGTTTT GGCCAGATCG CCAACGCCGC GCACGTCGGC GGGCTGCTCA TCGGATGCCT GACGGGCCTC TTGGGTGGTG CGCTGGCGCG GCGTAAACTG TCCGCTTGA
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Protein sequence | MNIVEVMRLP LSVDLSGFVH LLQRLQVPHR VSEEGEAQVL WAPETMAADV LQLYQRYPDG NADVELAQAP AQGDLPAKGP TLAEQAKACK VTAAVLFLCL IVAGLTRLGD NLTTISWFTF LDYRVQGEYL HFTPLAQGLA EGQWWRLVSP MLLHFGVLHL AMNGMWYWEL GKRIELRQGP WLLAGLTLLF SLVSNLAQHY TSGPSLFGGL SGVLYGLLGH VWLYQWLAPN PHFSLPKGVL VMMLIWLVIC LTGVVGQLGF GQIANAAHVG GLLIGCLTGL LGGALARRKL SA
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