| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1498 |
|---|
| Symbol | |
|---|
| ID | 6110432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 1653400 |
|---|
| End bp | 1654479 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641621278 |
|---|
| Product | fimbrial protein |
|---|
| Protein accession | YP_001748372 |
|---|
| Protein GI | 170720684 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCC TCATTCCCTG GGCGCTGCCC ATTGCCCTGC TAAGCAGCTA CAAGGCCCAC
GCCGCCGACC GCTGCAGCTG GAGCGCAGGC ACCCAGCCGA TGACCATCAC GCGCACACTC
ACCGGCGTGA TGCATGTGCC GCTGAATGCC GAACCCGGCA GCGCCATCGG CACACCCAAC
CAATGGGAGT TCACCGTCTC CATGCCTCAG TCGGAACTGC TTTGCTACAA CGACGGTGAC
GTACTCTGGC GTTTCGACAT GAACGCCAGA GATGTCTTCC CCGGCCCGCT TCCCCCGGTG
GAAGGCGAGC CGTCTGACGG GTATATCCTG AAAACCAACA TCGACGGCGT TGGCGCACGC
ATCCGGCTTC GGGCCCCGTT CAACGGCTCG GACCGCACCA GTTTCATGCC CGAGAATGGC
CCGCACGACC CCTTCATTCC GATGCGTTCG ACCATGCAAG CCAACAACCA GCTTGGTGGG
TTCAGGCTGG GCGGCATGTG GAACCAGGTA ACCCTGGTCA AGACGGGGGA TATCGCGCCC
GGCCTGCACC GGGTCGACAC CGAACTGTTC ACCGGGCATT TCGACGCCAC AGGCCTGGGG
CTGGTGATGC GCTACCGGTT ACAGGCCGAC GTACTGCAAA CCCAGTGCAG CCTCATCGGC
GACCCGATAA GCGACACCCC CGTAGACCTG CAGACATGGG ACAAATCGCA TTTCGCAAGC
AAAGGCACCA CAACGTCGAC CGTGCCATTC ACCATTACCC TGAGCAACTG CAAGACAGAC
CCAGGTGGCA TGACCAGGGC AACGATCGAG CTCGATCCCG CCAACAGTTC AGTCCCCGTA
CCTGGGCTGG ACGGCGTATT CACGCTCACC CCTGACTCCA CGGCTGAAGG GGTGGGCATC
CAGGTGCTGA AAGACGACGG TACCCCCCTG CCGCTGCGAC GAGAAGCAGA CCTTCAGGCG
ATTCAGGACG GCACCACCGT ACTGAACCTT GGTGCTCGCT TCTACCAGAC TGACGACGCC
AGCGCAGTTC GTGCTGGCGA AGCGAATGGC GCGTTGAACT TCACCCTTCG CTATCGCTGA
|
|---|
| Protein sequence | MKRLIPWALP IALLSSYKAH AADRCSWSAG TQPMTITRTL TGVMHVPLNA EPGSAIGTPN
QWEFTVSMPQ SELLCYNDGD VLWRFDMNAR DVFPGPLPPV EGEPSDGYIL KTNIDGVGAR
IRLRAPFNGS DRTSFMPENG PHDPFIPMRS TMQANNQLGG FRLGGMWNQV TLVKTGDIAP
GLHRVDTELF TGHFDATGLG LVMRYRLQAD VLQTQCSLIG DPISDTPVDL QTWDKSHFAS
KGTTTSTVPF TITLSNCKTD PGGMTRATIE LDPANSSVPV PGLDGVFTLT PDSTAEGVGI
QVLKDDGTPL PLRREADLQA IQDGTTVLNL GARFYQTDDA SAVRAGEANG ALNFTLRYR
|
|---|
| |