| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1440 |
|---|
| Symbol | |
|---|
| ID | 6110368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1580713 |
|---|
| End bp | 1581249 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641621214 |
|---|
| Product | oxidase |
|---|
| Protein accession | YP_001748314 |
|---|
| Protein GI | 170720626 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1791] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0261335 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATCC TCTGTGTATT CCACCCGTCC AGCCCGGCCT TGCCGAACAA GGTACTGACC
CACCACGACG ACATCACCGC AACGCTGGCA GAGCAGGGCG TGCGTTTTGA CCACGCTGCG
CTGGAGCTGC GCATACGGCC AGGCAGCAGC CAGGATGAAG TAATGAGCGC CTGCCGCGAA
CACCTTGACC GGTTGATGAC TGCCCAGGGC TGCGCAGCGT TCAGTGTGCT CAACCGCGAC
GGTGCCGACC CGGCACAGGT CGACCTGCGC GATGAGCATG TGCATGAGGT TGATGAAGTA
TTTGCCGTAG TCACAGGTCG TGCCCAGATC GGGCTTCGCC TGGGTGACTA TGTGTATGCG
CTGGTGTGTG AGAAAGGCGA CCAACTGGTG ATTCCGGCAG GGAGCCGGCG CTGGGTGGAG
CTGGGGGACA ACCCGTTCTG CCTGGCGCTG CGGCTGTACG CCAGCGAACA GGGCATGCAG
GCGCGCTTTA CCGGGGATGA TACTGCGCGT GCGTACGCCG GGATCGACGA GTTCTAG
|
|---|
| Protein sequence | MSILCVFHPS SPALPNKVLT HHDDITATLA EQGVRFDHAA LELRIRPGSS QDEVMSACRE
HLDRLMTAQG CAAFSVLNRD GADPAQVDLR DEHVHEVDEV FAVVTGRAQI GLRLGDYVYA
LVCEKGDQLV IPAGSRRWVE LGDNPFCLAL RLYASEQGMQ ARFTGDDTAR AYAGIDEF
|
|---|
| |