| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1406 |
|---|
| Symbol | |
|---|
| ID | 6110334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1545720 |
|---|
| End bp | 1547045 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641621180 |
|---|
| Product | HlyD family type I secretion membrane fusion protein |
|---|
| Protein accession | YP_001748280 |
|---|
| Protein GI | 170720592 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.575733 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.479497 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCA AAGCAATCAC CACGTTCGAC CACAATTTCG ATGACATGCC CACCTCCGAT
CGCGGTATTC GCCGCATCGG CCTGACCATC GTTTTCGTTA CTTTCGGCAT TTTTGGCACC
TGGGCTGCCG TCGCCCCGTT GAGCAATGCC GTACACGGTT CCGGCGTTGT CACTGTGCAA
AACTACCGCA AGACCGTGCA GCACCTGGAA GGCGGTATCG TCAAGGAACT GTTGGCCCGT
GACGGTGACA TGGTCAAGCA GGGCGACCCG CTGATCGTGC TGGATGAAGC TCAGCTTAGC
TCCGAGTACG AGTCCACCCG TAACCAGCTG ATCGTGGCTC GCTATAAAGA AGCGCGCTTG
CGCGCCGAGC GCGATGGGTT ACAGGCTATC CCGCCTGTAA CCATGGACGG CACCGATTCG
GACCGGGCCA TGGAAGCCCT GGCCGGTGAG CAGCAGGTGT TCAAGGCGCG GCACGATGCG
TTGCAAGGCG AGATCTCGGT CAACCGCGAG CGCATCGAGC AGATGAAGCA GCAGATCGCT
GGCCTCAACG ACATGATCCG CACCAAGCGC AACCTGGAAA AGTCCTACAC CGGTGAAATC
AAGCAGCTCA AAGAGCTGTT GGCCGAAGGC TTCGTCGACA ACCAGCGCCT GCTTGAGCAG
GAGCGCAAGC TCGACCTGCT CAAGACCGAA GTGGCCGACC ATGAGTCGAC CATCACCAAG
ACCAAGCTGC AGATCGGCGA AACCGAGCTG CAGATCGTGC AGTTGAAGAA GAAATTCGAC
TCGGATGTGG CCAACGAACT CTCCGAAGTA CAGGCCCAGG TGTTCGACCT GCAGGAAAAA
GAAGCTGCGC TGCGTGACCG CCTGTCGCGG GTGGTGATCC GCGCACCCGA AAGCGGCATG
GTGCTGGACA TGAAGGTGCA CACCATCGGC GGTGTGGTCA GTGCGGCCAC ACCACTGCTC
GATATCGTCC CGGCCTCTTC GGAGCTGGTG GTCGAAGCCA AGGTCGCGAC CAAAGACATC
GACCGCCTTG AGCTTGGCAA AACGGCGGAT ATCCGTTTCA GTGCCTTCAA CCAAGCGACA
ACCCCGGTTA TCGAAGGCAC GCTGATCCGT ATCTCCGCGG ATAGCCTGAC TGAGGAACGT
ACGGGTGACC CGTACTATCT GGTCCGGGTT AAGGTCACGG AGGACGGCAT GGAAAAACTC
GGCAACCGCA AGCTACAACC CGGCATGCCA GCTGATGTCC TGATCAACGC AGGCGACCGC
ACGATGCTGC AGTACCTGCT GAAACCGGCG CGCAACATGT TCGCTGAATC GCTGATCGAG
GAATGA
|
|---|
| Protein sequence | MSSKAITTFD HNFDDMPTSD RGIRRIGLTI VFVTFGIFGT WAAVAPLSNA VHGSGVVTVQ
NYRKTVQHLE GGIVKELLAR DGDMVKQGDP LIVLDEAQLS SEYESTRNQL IVARYKEARL
RAERDGLQAI PPVTMDGTDS DRAMEALAGE QQVFKARHDA LQGEISVNRE RIEQMKQQIA
GLNDMIRTKR NLEKSYTGEI KQLKELLAEG FVDNQRLLEQ ERKLDLLKTE VADHESTITK
TKLQIGETEL QIVQLKKKFD SDVANELSEV QAQVFDLQEK EAALRDRLSR VVIRAPESGM
VLDMKVHTIG GVVSAATPLL DIVPASSELV VEAKVATKDI DRLELGKTAD IRFSAFNQAT
TPVIEGTLIR ISADSLTEER TGDPYYLVRV KVTEDGMEKL GNRKLQPGMP ADVLINAGDR
TMLQYLLKPA RNMFAESLIE E
|
|---|
| |