| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1405 |
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| Symbol | |
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| ID | 6110333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1543896 |
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| End bp | 1545707 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641621179 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_001748279 |
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| Protein GI | 170720591 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.466667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.826572 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAC AATCCGAAAA TAACCTGCAA ACCGCACTCA AAGCCTGTAA AAGCAGCTTC
CTTTCGGTCG GTTTCTTCAG CTTCTTCGTC AATGCGCTGA TGCTGGTGCC CACCTTCTTC
ATGATTCAGG TGTCCGGGCG CGTCGTACCT TCCAGCAGCA CCTCCACGTT GTTGATGCTT
ACCCTTATTC TTACCATTCT GGTCGCCACC ATGGGTGCGC TGGAGTGGGT GCGCTCACGC
ATCATGGTGC GTATCAGCAA CCGTTTGGAT GTGATGCTCA GCCGCGATGT GTATCGGGCC
AGCTTCAAGC GCGCACTGAA CAGTGGTGGT TCGGACGCCA CTGCGCAGTC GTTGAACGAT
TTGACCGCAT TGCGTCAGTT TTTCACCGGT ACGGGGCTTT TTGCGTTTTT CGATGCACCA
TGGTTTCCCA TTTATACAGC GGTAATGTTC CTGTTCCATC CTTGGTTCGG TTGGATGACG
CTTGGGTGCG GTGTAGCACT CGCGGTCTTG GCGGTGGTCA ACCACCGCGT GACCGGCAAG
GCGTTGGCCA CTGCCAACAA AGAGAACGTC GCCTCTAACG TCATCACCAC CAAAACCCTG
CGCAATGCCG AAGTCATCGA GTCGATGGGC ATGCTTGAAA CGCTGATGAA TCGCTGGGCC
AAGCGCCAGC GCAACATCAT GCTGTTGCAG TCAGAGGCAA GCGATAAGGG CGGCGTGGTC
ACCTCGATTT CCAAGACGTT CCGCACCTGG TCGCAGTCGA TCATGCTGGC CATCGGTGCT
TACCTGGTAG TGACTCACGA AATCAACCCA GGCCTGCTGA TGGCCGGTTC CTTGCTGCTG
GGCCGAGCGC TGTCACCCAT CGACCAGATG ATCGGTAGCT GGAAAGGTTT CGTCGCCGCC
AAGGTTCAGT ACGACCGCCT GAGCAAGGTG ATGGACGACC TCAACAAAGA GCCGGAGCGC
ATGCCACTGC CTGCCCCGGA AGGCCACATC CAGGTGGAAA ACCTGATTGT CGCGCCCCCA
GGCGCCAAGG CCCCGGTACT GCGCAGCATC AGCTTCGTGG CGCCAGCCGG CTCCGTCGTC
GGCATCGTTG GCCCGAGCGC TGCGGGCAAG TCCACGCTGG TGCGCGCCCT GATGGGCATC
TGGCCACCCC AGCACGGCGT GGTGCGCCTG GATGGCGCCG ACATCTCGAC CTGGGACAAG
CAGGCCCTCG GCCCTTACGT CGGCTACCTG CCGCAGGACA TCGAGCTGTT CGAAGGCAGC
ATCAGCGAAA ACATCGCCCG CTTCGACAAA GTCGACCCGC AGAAGGTGGT GCAGGCGGCG
CAGATGGCCG GTGTGCACGA AATGATCCTG ATGCTCCCGG ACGGCTACGA CACCGTGATT
GGTAAGGACG GCGTCAACCT TTCAGGCGGC CAGCGCCAGC GCATCGGCCT TGCCCGTGCC
GTTTATGGCA ACCCGCGCCT GATCGTGCTC GATGAGCCCA ACTCCAACCT GGACGATGTG
GGCGAGCGCG CACTGGGCGT AGCCCTGCAA AAGCTCAAGG AAACCGGCGC CACGGTGTTC
ATCGTGTCGC ACCGCCCCAA CATCCTCACG CGCCTGGACC GCGTCCTGGT CATGGCTGGC
GGCACCATCT CGATGTATGG CGAGCGTGAT CGCGTCATCG CCGAGCTGGC CGCACAGCAG
GCCAAGGGCC AGCAGCGCGT CGCCCAACCG GCCGCGCCGC AACCTCCGGC CGTCGCGCCC
ACCGCACCTC GCCCGGCTCC CCCTGCGGCT CCTGCCGCTG CGCCCGTCAC CACGACCAGC
ACTGGCGCAT AA
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| Protein sequence | MSSQSENNLQ TALKACKSSF LSVGFFSFFV NALMLVPTFF MIQVSGRVVP SSSTSTLLML
TLILTILVAT MGALEWVRSR IMVRISNRLD VMLSRDVYRA SFKRALNSGG SDATAQSLND
LTALRQFFTG TGLFAFFDAP WFPIYTAVMF LFHPWFGWMT LGCGVALAVL AVVNHRVTGK
ALATANKENV ASNVITTKTL RNAEVIESMG MLETLMNRWA KRQRNIMLLQ SEASDKGGVV
TSISKTFRTW SQSIMLAIGA YLVVTHEINP GLLMAGSLLL GRALSPIDQM IGSWKGFVAA
KVQYDRLSKV MDDLNKEPER MPLPAPEGHI QVENLIVAPP GAKAPVLRSI SFVAPAGSVV
GIVGPSAAGK STLVRALMGI WPPQHGVVRL DGADISTWDK QALGPYVGYL PQDIELFEGS
ISENIARFDK VDPQKVVQAA QMAGVHEMIL MLPDGYDTVI GKDGVNLSGG QRQRIGLARA
VYGNPRLIVL DEPNSNLDDV GERALGVALQ KLKETGATVF IVSHRPNILT RLDRVLVMAG
GTISMYGERD RVIAELAAQQ AKGQQRVAQP AAPQPPAVAP TAPRPAPPAA PAAAPVTTTS
TGA
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