| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1216 |
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| Symbol | rumA |
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| ID | 6110140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1347523 |
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| End bp | 1348881 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641620986 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001748090 |
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| Protein GI | 170720402 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.374519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAGAA AGAAAAGTAA CAGCGGCCTG CGCTTTCAGC CGGCCGGCGG TAACCGCACG
CCCCAGGTCC CCGTGGGCAA AAAGCAGCGC CTGGAGATCG AGCGCCTGGC CGGTGACGGC
CGCGGCATCG CTTTCCACGA CGGGCGCACC TGGTTCGTCA GCGGCGCCCT GGCCGGTGAG
GCGGTGGAGG CGCGGGTGCT CAATGCCCGT GGCAAGGTAG TCGAGGCTCG CCTGGAGCGT
GTGCTGCAGG CCAGCCCCGA GCGCCGCCAG GCGCCGTGCC GCCATTACGA ACGTTGTGGT
GGTTGCAACT TGCAGCACCT GCCGCATGAG GCGCAGCTGG CGCTCAAGCA ACGTACCCTG
GCCGAACAGC TGCAACGGGT TGCCGGTGTG CAACCGCAAG AATGGGCGGC GCCATTGAGC
GGGCCGGAAT TCGGCTATCG GCGTCGGGCA CGTGTAGCCG TGCGCTGGGA TGTGAAAGCG
CGTCAGCTGG AGGTAGGGTT CCGTGCCGAG GCCAGCCAGG ACATCGTCGC CATCGACGAC
TGCGCCGTGC TGGTACAGCC TTTGCAGTCG ATTCTGCGGC ATCTGCCTAC CGTGCTGCGT
TCGTTGGGCA AGCCCCAGGC CATCGGCCAC GTCGAGCTGT TCAGCGGCAC GGCCGAAGCG
CTACTGGTAC GCCACGTGGC ACCGTTGCCG GCCGATGACC TGGCGCGTCT GCAGGCATTC
TGCAACGAGG CCAAGGCGCA GCTGTGGCTG CAGGGTGAAG GTGAACCGGC GCCGGTGGAT
GCTGGCACGA AGCTGGGCTT CACCTTGCAG CCTTGGCAGT TGGAGCTGGC CTGGCGCCCG
GGCGATTTCG TTCAGGTCAA CGCCCAGGTC AACACCGCAA TGATCGAGCA GGCTCTGGCC
TGGCTCGCTC CGCAGGCCGA TGAGCGAGTG CTCGACCTGT TCTGTGGCCT GGGCAATTTC
GCCCTGCCGC TGGCCCGCCA AGCGCGGGAA GTGGTGGCGG TCGAAGGAGT GCAGGCGATG
GTTGATCGTG CTGCGGCCAA TGCCAGAAAC AACAATGTGC ATAACGCACG GTTTTTTCAG
GCCGATTTAT CGCAGCCTTT GGCAGGCGCC GGATGGGCCG CCGAGGGCTT TTCTGCGGTA
CTCTTGGATC CACCGCGCGA CGGTGCTTTC GAGGTGGTGC AAGGCATCGC ACGCCTCAAG
GCCAAGCGGC TGGTTTATGT ATCATGCAAC CCGGCCACGC TGGCGCGAGA CGCCCAGGTA
CTGGTTGGCC AAGGGTACCG GTTAAAAAGG GCCGGGATTC TCGACATGTT TCCTCAGACG
GCGCATGTCG AGGCCATGGC GTTATTCGAA GCGGGCTAG
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| Protein sequence | MSRKKSNSGL RFQPAGGNRT PQVPVGKKQR LEIERLAGDG RGIAFHDGRT WFVSGALAGE
AVEARVLNAR GKVVEARLER VLQASPERRQ APCRHYERCG GCNLQHLPHE AQLALKQRTL
AEQLQRVAGV QPQEWAAPLS GPEFGYRRRA RVAVRWDVKA RQLEVGFRAE ASQDIVAIDD
CAVLVQPLQS ILRHLPTVLR SLGKPQAIGH VELFSGTAEA LLVRHVAPLP ADDLARLQAF
CNEAKAQLWL QGEGEPAPVD AGTKLGFTLQ PWQLELAWRP GDFVQVNAQV NTAMIEQALA
WLAPQADERV LDLFCGLGNF ALPLARQARE VVAVEGVQAM VDRAAANARN NNVHNARFFQ
ADLSQPLAGA GWAAEGFSAV LLDPPRDGAF EVVQGIARLK AKRLVYVSCN PATLARDAQV
LVGQGYRLKR AGILDMFPQT AHVEAMALFE AG
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