| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1162 |
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| Symbol | |
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| ID | 6110081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 1282485 |
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| End bp | 1285331 |
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| Gene Length | 2847 bp |
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| Protein Length | 948 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641620927 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_001748036 |
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| Protein GI | 170720348 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.504978 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.026685 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGC AGTATCAACC GGGGCAACGC TGGATCAGTG ACAGCGAAGC GGAGCTCGGC
CTGGGGACCA TTCTGGCCCA GGATGGCCGC TTGCTGACCG TGCTCTACCC GGCCACTGGC
GACACCCGCC AGTATTCCCT GCGCAACGCG CCGCTGACCC GCGTGCGCTT CTCGCCAGGT
GACCAGATCA CCCACTTCGA AGGCTGGAAG CTGACGGTAC GCGAAGTCGA GGACATCGAC
GGGCTGATGG TCTACCACGG CCTCGACGGC CAGAACCAGC CACGCACCCT GCCGGAAACC
CAGCTGTCGA ACTTCATCCA GTTCCGCCTG GCCAGCGACC GCCTGTTCGC CGGTCAGATC
GACCCGCTGT CCTGGTTCAG CCTGCGGTAC AACACGCTGC AGCACACCAG CAAGCAGGTA
CAGTCGTCGC TGTGGGGCCT GGGTGGCTGC CGCGCGCAGC CGATCGCCCA CCAGTTGCAC
ATCGCCCGTG AAGTAGCGGA CCGCAGCGCA CCTCGTGTAC TGCTGGCCGA CGAAGTGGGC
CTGGGCAAAA CCATCGAGGC TGGCCTGGTG ATCCATCGCC AGTTGCTGAC CGGGCGTGCC
AACCGCGTGC TGATCCTGGT ACCGGAAAAC CTCCAGCATC AATGGCTGGT GGAAATGCGT
CGGCGTTTCA ACCTGCAGGT GGCACTGTTC GACGCCGAAC GTTTCATTGA AAGCGACGCC
AGCAACCCGT TCGAGGACGC CCAGTTGGCT CTGGTCGCCC TGGAGTGGCT GGTCGAGGAT
GAAAAGGCCC AGGACGCGCT GTTCGCCGCA GGCTGGGACC TGATGGTAGT CGATGAAGCC
CACCACCTGG TGTGGCATGA AGACAAGGCC AGCACCGAAT ACAGCCTGGT CGAGCAACTG
GCCCAGGTCA TCCCGGGCGT ACTGTTGCTC ACCGCCACCC CCGAGCAGCT TGGTCAGGAC
AGTCACTTCG CGCGCCTGCG CCTGCTCGAC CCCAATCGCT TCCACGACCT GGCAGCCTTC
CGCGCCGAAA GCGAGCACTA TCGCCCGGTG GCTGAAGCCG TACAGGAACT GCTTGACGAA
GGGCGCCTGT CACCCAAGGC CCACGCCACC ATTCAAGGTT TCCTGGGTGC CGAGGGCGAA
GCCCTGCTGG CTGCAGTCAG CGATGGCGAC AGCCAGGCCA GCGCCCGCCT GATCCGCGAA
CTGCTCGACC GCCATGGCAC TGGCCGCGTC CTGTTCCGCA ACACCCGAGC GGCCATCCAG
GGTTTCCCGG AGCGCGAACT GCACCCTTAC CCGCTGCCAA TGCCGGAACA GTACCGCGAC
CTGCCAGCCG GCGAGCACGC CGAGCTGTAT CCGGAAGTCG CGTTCCAGGC ACAAGGTGAA
GTCAGCGACG ACGAGCGCTG GTGGCGTTTC GACCCTCGCG TCGACTGGCT GATCGACACC
CTGAAGATGC TCAAGCGCAC CAAGGTCCTG GTGATCTGCG CCCACGCCGA AACCGCCATG
GACCTGGAGG ACGCCCTGCG CGTGCGCTCC GGCATTCCAG CCTCGGTGTT CCATGAAGGC
ATGAGCATCC TGGAGCGCGA CCGCGCCGCA GCCTACTTCG CCGACGAAGA GTTCGGCGCC
CAGGTGCTTA TCTGCTCCGA GATCGGCAGC GAAGGGCGCA ACTTCCAGTT CGCCCACCAC
CTGGTGATGT TCGACCTGCC GGCCCACCCC GACCTGCTTG AGCAGCGCAT CGGCCGCCTC
GACCGGATCG GTCAGAAACA CGTCATCCAG TTGCACATCC CCTACCTGCA GGAAGGCCCG
CAAGAGCGCC TTTTCCAGTG GTACCACGAA GCACTCAACG CCTTCCTCAA CACCTGCCCG
ACCGGCAACG CCCTGCAGCA CCAGTTTGGC CCACGCCTGC TGCCGATGCT CGAAGGCGGG
GACAGCAAGG CCTGGGATGC CCTGGTAGCA GAAGCCAAAG GCGAGCGTGA ACGCCTGGAA
GCAGAACTGC ACAGCGGTCG CGACCGCCTG CTGGAGCTCA ACTCCGGCGG TGCTGGCGAA
GGCCAGGCGC TGGTCGAGGA CATTCTTGAG CAGGACGACC AGTTCGCTCT GCCGATCTAC
ATGGAAACCC TGTTCGATGC CTTCGGCATC GACAGCGAAG ACCACTCGGA AAACGCCCTC
ATCCTCAAAC CGAGCGAGAA GATGCTCGAT GCCAGCTTCC CGCTGGGCGA TGACGAAGGC
GTCACCATCA CCTACGACCG CGGCCAGGCG CTGTCGCGCG AAGACATGCA GTTCCTCACC
TGGGAACACC CGATGGTGCA GGGCGGCATG GACTTGGTAC TGTCCGGCTC GATGGGCAAT
ACCGCCGTCG CGCTGATCAA GAACAAGGCG CTCAAGCCTG GCACCGTACT GCTTGAACTG
CTGTTCGTCA GCGAGGTGGT GGCGCCGCGC AGCCTGCAAT TAGGCCGCTA CCTGCCGCCT
GCGGCGCTGC GCTGCCTGCT CGATGCCAAC GGCAACGACC TGGCCTCGCG CGTGGCCTTC
GAAACGCTCA ACGAGCAGCT CGAAAGCGTG CCTCGGGCCA GTGCCAACAA GTTCGTGCAG
GCCCAGCGTG ACGTGCTGGC CAAGCGCATC AGTGGCGGTG AAGCCAAGAT CATGCCGACC
CACGTCGAGC GTGTGGCAGA GGCGCAACGC CGCTTGGCCG CCGAAGCCGA CGAAGAACTG
GCGCGTCTGA CCGCTCTGAA AGCCGTCAAC CCGAGCGTAC GCGACAGCGA AATCGACGCC
CTGCGCAAGC AACGCGAAGA TGGCCTGGCG ATGCTCGAAA AGGCCGCCCT GCGCCTGGAG
GCAATCCGCG TGCTGGTGGC TGGCTGA
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| Protein sequence | MAQQYQPGQR WISDSEAELG LGTILAQDGR LLTVLYPATG DTRQYSLRNA PLTRVRFSPG
DQITHFEGWK LTVREVEDID GLMVYHGLDG QNQPRTLPET QLSNFIQFRL ASDRLFAGQI
DPLSWFSLRY NTLQHTSKQV QSSLWGLGGC RAQPIAHQLH IAREVADRSA PRVLLADEVG
LGKTIEAGLV IHRQLLTGRA NRVLILVPEN LQHQWLVEMR RRFNLQVALF DAERFIESDA
SNPFEDAQLA LVALEWLVED EKAQDALFAA GWDLMVVDEA HHLVWHEDKA STEYSLVEQL
AQVIPGVLLL TATPEQLGQD SHFARLRLLD PNRFHDLAAF RAESEHYRPV AEAVQELLDE
GRLSPKAHAT IQGFLGAEGE ALLAAVSDGD SQASARLIRE LLDRHGTGRV LFRNTRAAIQ
GFPERELHPY PLPMPEQYRD LPAGEHAELY PEVAFQAQGE VSDDERWWRF DPRVDWLIDT
LKMLKRTKVL VICAHAETAM DLEDALRVRS GIPASVFHEG MSILERDRAA AYFADEEFGA
QVLICSEIGS EGRNFQFAHH LVMFDLPAHP DLLEQRIGRL DRIGQKHVIQ LHIPYLQEGP
QERLFQWYHE ALNAFLNTCP TGNALQHQFG PRLLPMLEGG DSKAWDALVA EAKGERERLE
AELHSGRDRL LELNSGGAGE GQALVEDILE QDDQFALPIY METLFDAFGI DSEDHSENAL
ILKPSEKMLD ASFPLGDDEG VTITYDRGQA LSREDMQFLT WEHPMVQGGM DLVLSGSMGN
TAVALIKNKA LKPGTVLLEL LFVSEVVAPR SLQLGRYLPP AALRCLLDAN GNDLASRVAF
ETLNEQLESV PRASANKFVQ AQRDVLAKRI SGGEAKIMPT HVERVAEAQR RLAAEADEEL
ARLTALKAVN PSVRDSEIDA LRKQREDGLA MLEKAALRLE AIRVLVAG
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